Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00181

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00180 and MIT1002_00181 are separated by 65 nucleotidesMIT1002_00181 and MIT1002_00182 are separated by 74 nucleotidesMIT1002_00182 and MIT1002_00183 are separated by 253 nucleotides MIT1002_00180: MIT1002_00180 - Inner membrane transport protein YajR, at 196,500 to 197,837 _00180 MIT1002_00181: MIT1002_00181 - Fructose-1-phosphate phosphatase YqaB, at 197,903 to 198,487 _00181 MIT1002_00182: MIT1002_00182 - hypothetical protein, at 198,562 to 199,155 _00182 MIT1002_00183: MIT1002_00183 - Alpha/beta hydrolase family protein, at 199,409 to 200,272 _00183 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2 3at 196.911 kb on + strand, within MIT1002_00180at 197.050 kb on + strand, within MIT1002_00180at 197.050 kb on + strand, within MIT1002_00180at 197.055 kb on + strand, within MIT1002_00180at 197.063 kb on - strand, within MIT1002_00180at 197.105 kb on + strand, within MIT1002_00180at 197.148 kb on + strand, within MIT1002_00180at 197.339 kb on - strand, within MIT1002_00180at 197.365 kb on + strand, within MIT1002_00180at 197.550 kb on - strand, within MIT1002_00180at 197.654 kb on - strand, within MIT1002_00180at 197.657 kb on + strand, within MIT1002_00180at 197.657 kb on + strand, within MIT1002_00180at 197.664 kb on - strand, within MIT1002_00180at 197.664 kb on - strand, within MIT1002_00180at 197.665 kb on - strand, within MIT1002_00180at 197.665 kb on - strand, within MIT1002_00180at 197.692 kb on + strand, within MIT1002_00180at 197.692 kb on + strand, within MIT1002_00180at 197.716 kb on - strandat 197.744 kb on - strandat 197.759 kb on - strandat 197.830 kb on + strandat 197.835 kb on - strandat 197.857 kb on + strandat 197.901 kb on + strandat 197.952 kb on - strandat 197.976 kb on + strand, within MIT1002_00181at 198.042 kb on + strand, within MIT1002_00181at 198.077 kb on - strand, within MIT1002_00181at 198.149 kb on + strand, within MIT1002_00181at 198.158 kb on - strand, within MIT1002_00181at 198.168 kb on + strand, within MIT1002_00181at 198.208 kb on - strand, within MIT1002_00181at 198.236 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.304 kb on + strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.312 kb on - strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.328 kb on + strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.336 kb on - strand, within MIT1002_00181at 198.340 kb on + strand, within MIT1002_00181at 198.356 kb on - strand, within MIT1002_00181at 198.373 kb on - strand, within MIT1002_00181at 198.375 kb on + strand, within MIT1002_00181at 198.383 kb on - strand, within MIT1002_00181at 198.396 kb on - strand, within MIT1002_00181at 198.407 kb on - strand, within MIT1002_00181at 198.451 kb on - strandat 198.488 kb on + strandat 198.496 kb on - strandat 198.496 kb on - strandat 198.498 kb on + strandat 198.526 kb on - strandat 198.567 kb on - strandat 198.567 kb on - strandat 198.568 kb on - strandat 198.583 kb on - strandat 198.681 kb on + strand, within MIT1002_00182at 198.705 kb on + strand, within MIT1002_00182at 198.728 kb on + strand, within MIT1002_00182at 198.730 kb on + strand, within MIT1002_00182at 198.745 kb on - strand, within MIT1002_00182at 198.745 kb on - strand, within MIT1002_00182at 198.761 kb on + strand, within MIT1002_00182at 198.769 kb on - strand, within MIT1002_00182at 198.769 kb on - strand, within MIT1002_00182at 198.781 kb on - strand, within MIT1002_00182at 198.781 kb on - strand, within MIT1002_00182at 198.829 kb on + strand, within MIT1002_00182at 198.837 kb on - strand, within MIT1002_00182at 198.837 kb on - strand, within MIT1002_00182at 198.839 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.885 kb on + strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.893 kb on - strand, within MIT1002_00182at 198.898 kb on + strand, within MIT1002_00182at 198.913 kb on - strand, within MIT1002_00182at 198.960 kb on - strand, within MIT1002_00182at 198.960 kb on - strand, within MIT1002_00182at 198.971 kb on - strand, within MIT1002_00182at 198.981 kb on - strand, within MIT1002_00182at 199.007 kb on + strand, within MIT1002_00182at 199.016 kb on - strand, within MIT1002_00182at 199.077 kb on + strand, within MIT1002_00182at 199.084 kb on - strand, within MIT1002_00182at 199.097 kb on + strandat 199.102 kb on + strandat 199.110 kb on - strandat 199.115 kb on - strandat 199.163 kb on + strandat 199.282 kb on - strandat 199.297 kb on + strandat 199.297 kb on + strandat 199.297 kb on + strandat 199.305 kb on - strandat 199.353 kb on - strandat 199.353 kb on - strandat 199.354 kb on - strandat 199.365 kb on + strandat 199.449 kb on - strandat 199.470 kb on + strandat 199.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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196,911 + MIT1002_00180 0.31 +1.5
197,050 + MIT1002_00180 0.41 -0.4
197,050 + MIT1002_00180 0.41 +0.7
197,055 + MIT1002_00180 0.41 +2.0
197,063 - MIT1002_00180 0.42 -0.3
197,105 + MIT1002_00180 0.45 +0.3
197,148 + MIT1002_00180 0.48 -0.1
197,339 - MIT1002_00180 0.63 +0.0
197,365 + MIT1002_00180 0.65 -1.1
197,550 - MIT1002_00180 0.78 +1.1
197,654 - MIT1002_00180 0.86 -1.3
197,657 + MIT1002_00180 0.86 +1.0
197,657 + MIT1002_00180 0.86 -1.5
197,664 - MIT1002_00180 0.87 -1.1
197,664 - MIT1002_00180 0.87 -2.2
197,665 - MIT1002_00180 0.87 +0.3
197,665 - MIT1002_00180 0.87 -0.5
197,692 + MIT1002_00180 0.89 +1.7
197,692 + MIT1002_00180 0.89 +0.5
197,716 - -0.4
197,744 - -1.7
197,759 - -1.5
197,830 + -1.7
197,835 - +0.7
197,857 + +0.5
197,901 + -0.2
197,952 - -1.4
197,976 + MIT1002_00181 0.12 +0.2
198,042 + MIT1002_00181 0.24 -0.2
198,077 - MIT1002_00181 0.30 -0.2
198,149 + MIT1002_00181 0.42 +0.0
198,158 - MIT1002_00181 0.44 -0.5
198,168 + MIT1002_00181 0.45 -1.1
198,208 - MIT1002_00181 0.52 -0.4
198,236 + MIT1002_00181 0.57 +0.1
198,304 + MIT1002_00181 0.69 -0.3
198,304 + MIT1002_00181 0.69 -0.7
198,304 + MIT1002_00181 0.69 +0.7
198,304 + MIT1002_00181 0.69 -1.7
198,304 + MIT1002_00181 0.69 +0.8
198,304 + MIT1002_00181 0.69 -0.8
198,312 - MIT1002_00181 0.70 +2.0
198,312 - MIT1002_00181 0.70 +3.5
198,312 - MIT1002_00181 0.70 -1.9
198,312 - MIT1002_00181 0.70 -0.2
198,312 - MIT1002_00181 0.70 -0.9
198,312 - MIT1002_00181 0.70 +2.0
198,328 + MIT1002_00181 0.73 -1.4
198,328 + MIT1002_00181 0.73 -2.3
198,328 + MIT1002_00181 0.73 -0.7
198,336 - MIT1002_00181 0.74 +1.7
198,336 - MIT1002_00181 0.74 -0.4
198,336 - MIT1002_00181 0.74 +1.3
198,340 + MIT1002_00181 0.75 +0.5
198,356 - MIT1002_00181 0.77 +1.4
198,373 - MIT1002_00181 0.80 +1.0
198,375 + MIT1002_00181 0.81 +2.4
198,383 - MIT1002_00181 0.82 -0.9
198,396 - MIT1002_00181 0.84 +1.0
198,407 - MIT1002_00181 0.86 -0.7
198,451 - +1.2
198,488 + +0.0
198,496 - -0.8
198,496 - +0.3
198,498 + +2.3
198,526 - -0.1
198,567 - -2.1
198,567 - -0.5
198,568 - +0.9
198,583 - +0.2
198,681 + MIT1002_00182 0.20 +0.1
198,705 + MIT1002_00182 0.24 +0.5
198,728 + MIT1002_00182 0.28 -0.5
198,730 + MIT1002_00182 0.28 +0.1
198,745 - MIT1002_00182 0.31 +0.1
198,745 - MIT1002_00182 0.31 +0.3
198,761 + MIT1002_00182 0.34 -0.3
198,769 - MIT1002_00182 0.35 +1.1
198,769 - MIT1002_00182 0.35 +0.4
198,781 - MIT1002_00182 0.37 +2.0
198,781 - MIT1002_00182 0.37 -0.2
198,829 + MIT1002_00182 0.45 -0.9
198,837 - MIT1002_00182 0.46 -0.1
198,837 - MIT1002_00182 0.46 +0.8
198,839 + MIT1002_00182 0.47 +0.3
198,885 + MIT1002_00182 0.54 -0.2
198,885 + MIT1002_00182 0.54 +2.0
198,885 + MIT1002_00182 0.54 +0.4
198,885 + MIT1002_00182 0.54 +2.0
198,893 - MIT1002_00182 0.56 -1.1
198,893 - MIT1002_00182 0.56 +2.2
198,893 - MIT1002_00182 0.56 +0.1
198,893 - MIT1002_00182 0.56 -1.5
198,893 - MIT1002_00182 0.56 +1.9
198,898 + MIT1002_00182 0.57 -0.3
198,913 - MIT1002_00182 0.59 -0.5
198,960 - MIT1002_00182 0.67 -0.4
198,960 - MIT1002_00182 0.67 +0.1
198,971 - MIT1002_00182 0.69 -1.8
198,981 - MIT1002_00182 0.71 -1.0
199,007 + MIT1002_00182 0.75 +1.2
199,016 - MIT1002_00182 0.76 -0.7
199,077 + MIT1002_00182 0.87 +0.3
199,084 - MIT1002_00182 0.88 +0.5
199,097 + -0.1
199,102 + -0.8
199,110 - -0.3
199,115 - -0.0
199,163 + +0.0
199,282 - -0.4
199,297 + +1.2
199,297 + +0.8
199,297 + +1.3
199,305 - +0.3
199,353 - +1.4
199,353 - -0.0
199,354 - -0.6
199,365 + +0.8
199,449 - -0.5
199,470 + -0.7
199,478 - +2.5

Or see this region's nucleotide sequence