Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00087

Experiment: monoculture; Experiment B, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00086 and MIT1002_00087 are separated by 213 nucleotidesMIT1002_00087 and MIT1002_00088 are separated by 137 nucleotides MIT1002_00086: MIT1002_00086 - (R)-benzylsuccinyl-CoA dehydrogenase, at 92,569 to 93,789 _00086 MIT1002_00087: MIT1002_00087 - hypothetical protein, at 94,003 to 94,926 _00087 MIT1002_00088: MIT1002_00088 - hydroxyacylglutathione hydrolase, at 95,064 to 95,825 _00088 Position (kb) 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 93.021 kb on - strand, within MIT1002_00086at 93.033 kb on - strand, within MIT1002_00086at 93.051 kb on - strand, within MIT1002_00086at 93.058 kb on - strand, within MIT1002_00086at 93.100 kb on + strand, within MIT1002_00086at 93.161 kb on + strand, within MIT1002_00086at 93.161 kb on + strand, within MIT1002_00086at 93.187 kb on - strand, within MIT1002_00086at 93.187 kb on - strand, within MIT1002_00086at 93.212 kb on + strand, within MIT1002_00086at 93.232 kb on - strand, within MIT1002_00086at 93.245 kb on + strand, within MIT1002_00086at 93.253 kb on - strand, within MIT1002_00086at 93.253 kb on - strand, within MIT1002_00086at 93.253 kb on - strand, within MIT1002_00086at 93.255 kb on + strand, within MIT1002_00086at 93.256 kb on + strand, within MIT1002_00086at 93.256 kb on + strand, within MIT1002_00086at 93.256 kb on + strand, within MIT1002_00086at 93.256 kb on + strand, within MIT1002_00086at 93.256 kb on + strand, within MIT1002_00086at 93.264 kb on - strand, within MIT1002_00086at 93.264 kb on - strand, within MIT1002_00086at 93.264 kb on - strand, within MIT1002_00086at 93.305 kb on - strand, within MIT1002_00086at 93.353 kb on + strand, within MIT1002_00086at 93.353 kb on + strand, within MIT1002_00086at 93.393 kb on - strand, within MIT1002_00086at 93.527 kb on + strand, within MIT1002_00086at 93.540 kb on + strand, within MIT1002_00086at 93.555 kb on + strand, within MIT1002_00086at 93.555 kb on + strand, within MIT1002_00086at 93.555 kb on + strand, within MIT1002_00086at 93.556 kb on + strand, within MIT1002_00086at 93.556 kb on + strand, within MIT1002_00086at 93.564 kb on - strand, within MIT1002_00086at 93.564 kb on - strand, within MIT1002_00086at 93.564 kb on - strand, within MIT1002_00086at 93.592 kb on + strand, within MIT1002_00086at 93.592 kb on + strand, within MIT1002_00086at 93.592 kb on + strand, within MIT1002_00086at 93.600 kb on - strand, within MIT1002_00086at 93.600 kb on - strand, within MIT1002_00086at 93.620 kb on - strand, within MIT1002_00086at 93.640 kb on - strand, within MIT1002_00086at 93.826 kb on - strandat 94.101 kb on - strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.142 kb on + strand, within MIT1002_00087at 94.150 kb on - strand, within MIT1002_00087at 94.150 kb on - strand, within MIT1002_00087at 94.288 kb on + strand, within MIT1002_00087at 94.296 kb on - strand, within MIT1002_00087at 94.308 kb on - strand, within MIT1002_00087at 94.339 kb on - strand, within MIT1002_00087at 94.344 kb on + strand, within MIT1002_00087at 94.362 kb on - strand, within MIT1002_00087at 94.367 kb on - strand, within MIT1002_00087at 94.507 kb on + strand, within MIT1002_00087at 94.507 kb on + strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.515 kb on - strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.523 kb on + strand, within MIT1002_00087at 94.589 kb on - strand, within MIT1002_00087at 94.598 kb on + strand, within MIT1002_00087at 94.606 kb on + strand, within MIT1002_00087at 94.683 kb on - strand, within MIT1002_00087at 94.696 kb on - strand, within MIT1002_00087at 94.725 kb on + strand, within MIT1002_00087at 94.732 kb on - strand, within MIT1002_00087at 94.733 kb on - strand, within MIT1002_00087at 94.733 kb on - strand, within MIT1002_00087at 94.744 kb on + strand, within MIT1002_00087at 94.793 kb on - strand, within MIT1002_00087at 94.864 kb on + strandat 94.873 kb on - strandat 94.943 kb on + strandat 94.972 kb on - strandat 95.005 kb on - strandat 95.085 kb on - strandat 95.109 kb on + strandat 95.117 kb on - strandat 95.157 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.191 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.212 kb on + strand, within MIT1002_00088at 95.235 kb on + strand, within MIT1002_00088at 95.255 kb on - strand, within MIT1002_00088at 95.297 kb on - strand, within MIT1002_00088at 95.349 kb on + strand, within MIT1002_00088at 95.356 kb on + strand, within MIT1002_00088at 95.382 kb on - strand, within MIT1002_00088at 95.433 kb on - strand, within MIT1002_00088at 95.442 kb on + strand, within MIT1002_00088at 95.501 kb on - strand, within MIT1002_00088at 95.507 kb on + strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.515 kb on - strand, within MIT1002_00088at 95.550 kb on - strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.582 kb on + strand, within MIT1002_00088at 95.590 kb on - strand, within MIT1002_00088at 95.762 kb on - strandat 95.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 6
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93,021 - MIT1002_00086 0.37 +2.3
93,033 - MIT1002_00086 0.38 +2.9
93,051 - MIT1002_00086 0.39 +0.6
93,058 - MIT1002_00086 0.40 +0.5
93,100 + MIT1002_00086 0.43 +0.8
93,161 + MIT1002_00086 0.48 -1.0
93,161 + MIT1002_00086 0.48 -1.7
93,187 - MIT1002_00086 0.51 +0.6
93,187 - MIT1002_00086 0.51 -0.4
93,212 + MIT1002_00086 0.53 +0.1
93,232 - MIT1002_00086 0.54 +1.0
93,245 + MIT1002_00086 0.55 +1.0
93,253 - MIT1002_00086 0.56 +1.6
93,253 - MIT1002_00086 0.56 -1.1
93,253 - MIT1002_00086 0.56 -0.4
93,255 + MIT1002_00086 0.56 -0.3
93,256 + MIT1002_00086 0.56 -0.9
93,256 + MIT1002_00086 0.56 -0.7
93,256 + MIT1002_00086 0.56 -0.2
93,256 + MIT1002_00086 0.56 +1.5
93,256 + MIT1002_00086 0.56 -0.8
93,264 - MIT1002_00086 0.57 -0.1
93,264 - MIT1002_00086 0.57 -0.7
93,264 - MIT1002_00086 0.57 +0.4
93,305 - MIT1002_00086 0.60 -0.7
93,353 + MIT1002_00086 0.64 +1.3
93,353 + MIT1002_00086 0.64 -0.1
93,393 - MIT1002_00086 0.67 -0.9
93,527 + MIT1002_00086 0.78 +1.7
93,540 + MIT1002_00086 0.80 +3.0
93,555 + MIT1002_00086 0.81 -1.1
93,555 + MIT1002_00086 0.81 +0.9
93,555 + MIT1002_00086 0.81 +0.2
93,556 + MIT1002_00086 0.81 -1.8
93,556 + MIT1002_00086 0.81 -0.7
93,564 - MIT1002_00086 0.81 +0.6
93,564 - MIT1002_00086 0.81 -0.3
93,564 - MIT1002_00086 0.81 +0.1
93,592 + MIT1002_00086 0.84 +0.9
93,592 + MIT1002_00086 0.84 +2.0
93,592 + MIT1002_00086 0.84 +0.6
93,600 - MIT1002_00086 0.84 +0.2
93,600 - MIT1002_00086 0.84 +2.4
93,620 - MIT1002_00086 0.86 -1.3
93,640 - MIT1002_00086 0.88 +0.3
93,826 - +0.5
94,101 - MIT1002_00087 0.11 -0.4
94,142 + MIT1002_00087 0.15 +2.0
94,142 + MIT1002_00087 0.15 +0.9
94,142 + MIT1002_00087 0.15 -0.6
94,150 - MIT1002_00087 0.16 -1.0
94,150 - MIT1002_00087 0.16 -0.4
94,288 + MIT1002_00087 0.31 +1.5
94,296 - MIT1002_00087 0.32 +0.6
94,308 - MIT1002_00087 0.33 +0.0
94,339 - MIT1002_00087 0.36 -0.9
94,344 + MIT1002_00087 0.37 -0.5
94,362 - MIT1002_00087 0.39 -1.4
94,367 - MIT1002_00087 0.39 -0.0
94,507 + MIT1002_00087 0.55 -0.1
94,507 + MIT1002_00087 0.55 -0.6
94,515 - MIT1002_00087 0.55 -0.6
94,515 - MIT1002_00087 0.55 +0.4
94,515 - MIT1002_00087 0.55 -0.5
94,523 + MIT1002_00087 0.56 -1.1
94,523 + MIT1002_00087 0.56 -0.5
94,523 + MIT1002_00087 0.56 +0.9
94,589 - MIT1002_00087 0.63 -1.5
94,598 + MIT1002_00087 0.64 -0.7
94,606 + MIT1002_00087 0.65 -0.2
94,683 - MIT1002_00087 0.74 +0.3
94,696 - MIT1002_00087 0.75 -1.3
94,725 + MIT1002_00087 0.78 -0.5
94,732 - MIT1002_00087 0.79 -0.0
94,733 - MIT1002_00087 0.79 +0.0
94,733 - MIT1002_00087 0.79 -0.6
94,744 + MIT1002_00087 0.80 +1.9
94,793 - MIT1002_00087 0.85 -0.2
94,864 + +0.3
94,873 - +1.6
94,943 + -0.3
94,972 - -3.5
95,005 - +0.7
95,085 - +1.7
95,109 + -0.1
95,117 - -0.0
95,157 + MIT1002_00088 0.12 +1.7
95,191 + MIT1002_00088 0.17 -1.4
95,191 + MIT1002_00088 0.17 +2.2
95,212 + MIT1002_00088 0.19 +0.3
95,212 + MIT1002_00088 0.19 -1.6
95,235 + MIT1002_00088 0.22 -1.8
95,255 - MIT1002_00088 0.25 -2.1
95,297 - MIT1002_00088 0.31 -0.3
95,349 + MIT1002_00088 0.37 -0.8
95,356 + MIT1002_00088 0.38 -1.4
95,382 - MIT1002_00088 0.42 -0.0
95,433 - MIT1002_00088 0.48 -1.5
95,442 + MIT1002_00088 0.50 -0.2
95,501 - MIT1002_00088 0.57 -0.5
95,507 + MIT1002_00088 0.58 +0.4
95,515 - MIT1002_00088 0.59 +1.7
95,515 - MIT1002_00088 0.59 -1.3
95,550 - MIT1002_00088 0.64 +0.3
95,582 + MIT1002_00088 0.68 -1.2
95,582 + MIT1002_00088 0.68 +2.7
95,590 - MIT1002_00088 0.69 -1.0
95,762 - -1.7
95,878 + +0.2

Or see this region's nucleotide sequence