Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03996

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
4,482,356	-		MIT1002_03995	0.49	-1.2
4,482,356	-		MIT1002_03995	0.49	-2.3
4,482,487	-		MIT1002_03995	0.55	+0.2
4,482,512	-		MIT1002_03995	0.57	-0.2
4,482,592	+		MIT1002_03995	0.61	+1.5
4,482,597	+		MIT1002_03995	0.61	-1.0
4,482,605	-		MIT1002_03995	0.61	+1.2
4,482,605	-		MIT1002_03995	0.61	-0.0
4,482,626	+		MIT1002_03995	0.62	-0.1
4,482,800	+		MIT1002_03995	0.71	+1.4
4,482,808	-		MIT1002_03995	0.72	+0.7
4,482,911	+		MIT1002_03995	0.77	+0.6
4,482,932	+		MIT1002_03995	0.78	-0.1
4,483,051	-		MIT1002_03995	0.84	+0.1
4,483,051	-		MIT1002_03995	0.84	-0.2
4,483,052	-		MIT1002_03995	0.84	-0.2
4,483,124	+		MIT1002_03995	0.87	-1.1
4,483,124	+		MIT1002_03995	0.87	+0.1
4,483,125	+		MIT1002_03995	0.88	+1.7
4,483,132	-		MIT1002_03995	0.88	+0.1
4,483,132	-		MIT1002_03995	0.88	+0.6
4,483,201	-				-1.1
4,483,259	-				-0.5
4,483,308	-				-0.3
4,483,318	+				-0.5
4,483,318	+				+0.8
4,483,318	+				-0.2
4,483,326	-				+1.1
4,483,326	-				+1.7
4,483,329	+				+1.5
4,483,329	+				+0.1
4,483,337	-				-0.1
4,483,383	+				+1.5
4,483,394	+				+0.2
4,483,412	+				+0.4
4,483,412	+				+0.8
4,483,412	+				-1.3
4,483,531	-		MIT1002_03996	0.11	-0.3
4,483,597	+		MIT1002_03996	0.15	-0.5
4,483,605	-		MIT1002_03996	0.15	-0.2
4,483,652	+		MIT1002_03996	0.18	-0.8
4,483,674	+		MIT1002_03996	0.20	-0.3
4,483,682	-		MIT1002_03996	0.20	+0.3
4,483,684	-		MIT1002_03996	0.20	+0.1
4,483,684	-		MIT1002_03996	0.20	+1.4
4,483,684	-		MIT1002_03996	0.20	+0.3
4,483,689	-		MIT1002_03996	0.21	-1.6
4,483,762	+		MIT1002_03996	0.25	-0.6
4,483,827	+		MIT1002_03996	0.29	+1.4
4,483,930	+		MIT1002_03996	0.35	-0.7
4,483,957	-		MIT1002_03996	0.37	+1.4
4,483,957	-		MIT1002_03996	0.37	-0.5
4,483,979	+		MIT1002_03996	0.38	-1.0
4,483,987	-		MIT1002_03996	0.39	+1.2
4,484,035	+		MIT1002_03996	0.42	-0.5
4,484,046	-		MIT1002_03996	0.43	+0.2
4,484,056	+		MIT1002_03996	0.43	+1.8
4,484,064	+		MIT1002_03996	0.44	+0.9
4,484,064	+		MIT1002_03996	0.44	-1.9
4,484,064	+		MIT1002_03996	0.44	-1.8
4,484,072	-		MIT1002_03996	0.44	-0.2
4,484,098	+		MIT1002_03996	0.46	+1.2
4,484,106	-		MIT1002_03996	0.46	+1.3
4,484,120	+		MIT1002_03996	0.47	+0.4
4,484,130	+		MIT1002_03996	0.48	-0.5
4,484,130	+		MIT1002_03996	0.48	+1.7
4,484,130	+		MIT1002_03996	0.48	+1.5
4,484,138	-		MIT1002_03996	0.48	-0.0
4,484,138	-		MIT1002_03996	0.48	+0.7
4,484,176	+		MIT1002_03996	0.51	-0.7
4,484,181	+		MIT1002_03996	0.51	-0.7
4,484,206	-		MIT1002_03996	0.52	-0.6
4,484,262	+		MIT1002_03996	0.56	-0.3
4,484,262	+		MIT1002_03996	0.56	-0.1
4,484,272	-		MIT1002_03996	0.56	+0.2
4,484,278	-		MIT1002_03996	0.57	+2.2
4,484,294	+		MIT1002_03996	0.58	+1.1
4,484,297	-		MIT1002_03996	0.58	-0.5
4,484,327	+		MIT1002_03996	0.60	+1.5
4,484,510	+		MIT1002_03996	0.71	+0.6
4,484,571	-		MIT1002_03996	0.75	-1.3
4,484,600	+		MIT1002_03996	0.77	+1.3
4,484,651	-		MIT1002_03996	0.80	+1.3
4,484,754	+		MIT1002_03996	0.86	+0.1
4,484,769	-		MIT1002_03996	0.87	-0.0
4,484,833	-				-0.5
4,484,880	+				-1.5
4,484,977	+				-0.7
4,485,005	-				-1.3
4,485,085	-				-0.2
4,485,145	+				+0.4
4,485,163	-				+2.6
4,485,186	+				-0.1
4,485,194	-				+0.8
4,485,199	-				-0.1
4,485,290	+				+1.9
4,485,290	+				+0.7
4,485,290	+				+1.3
4,485,515	-				+0.8
4,485,549	+				+0.0
4,485,575	+				-0.3
4,485,580	+				-1.8
4,485,589	+				+0.1
4,485,589	+				-0.2
4,485,636	+				-0.4
4,485,636	+				+1.9
4,485,636	+				+1.8
4,485,644	-				+0.4
4,485,644	-				-0.7
4,485,713	-				-1.4
4,485,763	-				-0.7
4,485,891	-		MIT1002_03997	0.28	-1.6
4,485,938	+		MIT1002_03997	0.37	+2.3
4,485,977	+		MIT1002_03997	0.44	+0.4