Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03944

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
4,427,499	+				+0.8
4,427,726	+				+0.7
4,427,824	-				+1.4
4,427,865	-				+0.5
4,427,866	-				+1.4
4,427,905	+				+0.7
4,427,935	+				+0.6
4,427,940	+				+1.1
4,427,948	-				-0.9
4,428,153	+		MIT1002_03944	0.23	+0.2
4,428,153	+		MIT1002_03944	0.23	+1.4
4,428,220	+		MIT1002_03944	0.30	+1.2
4,428,280	-		MIT1002_03944	0.36	+0.1
4,428,345	-		MIT1002_03944	0.43	-0.8
4,428,352	-		MIT1002_03944	0.44	+1.0
4,428,352	-		MIT1002_03944	0.44	+0.3
4,428,430	+		MIT1002_03944	0.52	-1.3
4,428,508	-		MIT1002_03944	0.60	+0.5
4,428,521	+		MIT1002_03944	0.61	+0.4
4,428,599	-		MIT1002_03944	0.69	+0.2
4,428,601	+		MIT1002_03944	0.69	-1.1
4,428,626	+		MIT1002_03944	0.72	+0.2
4,428,672	+		MIT1002_03944	0.77	+2.6
4,428,680	-		MIT1002_03944	0.78	-1.2
4,428,754	+		MIT1002_03944	0.85	+0.9
4,428,764	+		MIT1002_03944	0.86	-2.4
4,428,767	-		MIT1002_03944	0.87	+0.4
4,428,831	+				+0.4
4,428,831	-				+0.4
4,428,870	+				+0.5
4,428,878	-				-1.3
4,428,878	-				+1.2
4,428,878	-				-1.0
4,428,878	-				+2.5
4,428,942	+				+0.7
4,428,950	-				+0.8
4,428,967	+				+2.1
4,428,975	-				-0.3
4,428,975	-				-1.5
4,428,987	+				+1.3
4,429,050	-				+0.0
4,429,101	-				+0.5
4,429,161	+				-2.1
4,429,246	+		MIT1002_03945	0.23	-0.4
4,429,256	-		MIT1002_03945	0.25	-0.1
4,429,265	+		MIT1002_03945	0.27	+0.1
4,429,266	+		MIT1002_03945	0.27	+0.1
4,429,266	+		MIT1002_03945	0.27	-2.3
4,429,276	+		MIT1002_03945	0.29	+1.4
4,429,375	-		MIT1002_03945	0.52	+2.0
4,429,399	+		MIT1002_03945	0.57	-0.2
4,429,422	-		MIT1002_03945	0.63	+0.5
4,429,483	-		MIT1002_03945	0.76	-0.6
4,429,564	-				-0.5
4,429,598	+				-0.2
4,429,598	+				-0.8
4,429,598	+				-0.7
4,429,598	+				-1.0
4,429,606	-				+1.2
4,429,635	-				+0.9
4,429,639	+				+0.7
4,429,683	-		MIT1002_03946	0.17	+1.2
4,429,683	-		MIT1002_03946	0.17	-0.4
4,429,694	+		MIT1002_03946	0.21	-1.1
4,429,694	+		MIT1002_03946	0.21	-2.6
4,429,695	-		MIT1002_03946	0.21	-0.1
4,429,841	+		MIT1002_03946	0.77	-1.9
4,429,841	+		MIT1002_03946	0.77	-0.6