Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03859

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
4,323,501	-		MIT1002_03858	0.63	-1.4
4,323,580	-		MIT1002_03858	0.66	+1.6
4,323,592	+		MIT1002_03858	0.67	-1.2
4,323,600	-		MIT1002_03858	0.67	-0.7
4,323,600	-		MIT1002_03858	0.67	+0.8
4,323,681	+		MIT1002_03858	0.71	-0.9
4,323,688	-		MIT1002_03858	0.71	-0.9
4,323,777	+		MIT1002_03858	0.75	+0.1
4,323,811	-		MIT1002_03858	0.76	-1.4
4,323,840	-		MIT1002_03858	0.77	+0.1
4,323,840	-		MIT1002_03858	0.77	-2.7
4,323,840	-		MIT1002_03858	0.77	+1.1
4,323,882	-		MIT1002_03858	0.79	+1.6
4,323,945	+		MIT1002_03858	0.82	-0.4
4,323,953	-		MIT1002_03858	0.82	-1.6
4,323,998	+		MIT1002_03858	0.84	-1.1
4,324,011	+		MIT1002_03858	0.84	-0.5
4,324,038	+		MIT1002_03858	0.85	-0.1
4,324,038	+		MIT1002_03858	0.85	-3.0
4,324,046	-		MIT1002_03858	0.86	-0.2
4,324,213	+				-1.7
4,324,305	+				+0.2
4,324,329	+				+1.4
4,324,337	-				-0.6
4,324,361	+				-1.9
4,324,361	+				-1.3
4,324,361	+				+1.3
4,324,361	+				-1.6
4,324,389	+				-0.8
4,324,631	+		MIT1002_03859	0.24	+1.0
4,324,638	-		MIT1002_03859	0.26	-1.9
4,324,827	+		MIT1002_03859	0.56	+0.1
4,324,860	+		MIT1002_03859	0.61	+1.3
4,324,866	+		MIT1002_03859	0.62	+1.6
4,324,904	+		MIT1002_03859	0.68	-1.4
4,324,905	+		MIT1002_03859	0.68	+0.4
4,324,905	+		MIT1002_03859	0.68	-0.8
4,324,946	+		MIT1002_03859	0.75	-1.0
4,324,977	+		MIT1002_03859	0.80	+1.3
4,325,048	+				-0.6
4,325,048	+				+0.5
4,325,056	-				-2.1
4,325,056	-				-1.7
4,325,063	-				-0.9
4,325,146	-				-0.6
4,325,204	-				-0.3
4,325,361	+		MIT1002_03860	0.35	+0.2
4,325,402	-		MIT1002_03860	0.44	+1.4
4,325,434	-		MIT1002_03860	0.51	-0.7
4,325,486	+		MIT1002_03860	0.63	-1.5
4,325,579	+		MIT1002_03860	0.83	+1.3
4,325,585	+		MIT1002_03860	0.85	+0.5
4,325,593	-		MIT1002_03860	0.87	-1.0
4,325,593	-		MIT1002_03860	0.87	-1.5
4,325,607	-		MIT1002_03860	0.90	+0.8
4,325,763	-				-0.2
4,325,763	-				-0.7
4,325,799	-				-0.8
4,325,799	-				-0.1
4,325,806	-				+0.8
4,325,843	+		MIT1002_03861	0.10	-1.4
4,325,843	-		MIT1002_03861	0.10	-0.1
4,325,851	-		MIT1002_03861	0.11	+2.2
4,325,928	+		MIT1002_03861	0.19	-1.2
4,325,931	-		MIT1002_03861	0.20	-0.3
4,325,941	-		MIT1002_03861	0.21	-1.2
4,325,964	-		MIT1002_03861	0.23	-1.4
4,326,010	+		MIT1002_03861	0.28	-0.6
4,326,070	-		MIT1002_03861	0.35	-1.1