Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03714

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
4,147,381	+		MIT1002_03712	0.24	+1.5
4,147,401	+		MIT1002_03712	0.28	-1.0
4,147,409	+		MIT1002_03712	0.29	+1.6
4,147,417	-		MIT1002_03712	0.30	-1.4
4,147,483	+		MIT1002_03712	0.41	-0.4
4,147,505	+		MIT1002_03712	0.45	-0.3
4,147,540	+		MIT1002_03712	0.51	+0.8
4,147,567	+		MIT1002_03712	0.55	+2.0
4,147,608	-		MIT1002_03712	0.62	+1.2
4,147,628	+		MIT1002_03712	0.66	-0.1
4,147,693	-		MIT1002_03712	0.76	-0.8
4,147,736	-		MIT1002_03712	0.83	+0.0
4,147,776	+				+0.8
4,147,779	-				-0.4
4,147,863	-				-0.1
4,147,898	-				-0.9
4,147,964	+				+0.2
4,147,972	-				-1.4
4,148,025	-		MIT1002_03713	0.13	-1.5
4,148,040	+		MIT1002_03713	0.17	+0.7
4,148,067	-		MIT1002_03713	0.25	+0.4
4,148,068	-		MIT1002_03713	0.25	+0.3
4,148,101	+		MIT1002_03713	0.35	+0.2
4,148,101	+		MIT1002_03713	0.35	-0.3
4,148,108	+		MIT1002_03713	0.37	-1.0
4,148,119	+		MIT1002_03713	0.40	+0.7
4,148,140	+		MIT1002_03713	0.46	+0.5
4,148,140	+		MIT1002_03713	0.46	+1.1
4,148,140	+		MIT1002_03713	0.46	-0.5
4,148,140	+		MIT1002_03713	0.46	+1.3
4,148,140	+		MIT1002_03713	0.46	+0.2
4,148,140	+		MIT1002_03713	0.46	+0.7
4,148,140	+		MIT1002_03713	0.46	-0.1
4,148,148	-		MIT1002_03713	0.48	-0.5
4,148,211	+		MIT1002_03713	0.66	+1.6
4,148,220	+		MIT1002_03713	0.69	+0.6
4,148,220	+		MIT1002_03713	0.69	-0.6
4,148,220	+		MIT1002_03713	0.69	+0.7
4,148,228	-		MIT1002_03713	0.71	+1.3
4,148,229	+		MIT1002_03713	0.71	-1.8
4,148,247	+		MIT1002_03713	0.76	-0.3
4,148,344	+				+2.6
4,148,344	+				-0.9
4,148,352	-				-1.7
4,148,397	+				-0.0
4,148,399	+				+0.8
4,148,399	+				+0.1
4,148,407	-				+1.1
4,148,410	-				+1.3
4,148,426	+				-1.1
4,148,451	-				+0.4
4,148,456	-				-1.2
4,148,458	+				+0.8
4,148,458	+				+2.9
4,148,458	+				-1.6
4,148,475	+				-0.1
4,148,477	-				+0.9
4,148,483	-				-1.5
4,148,490	+		MIT1002_03714	0.10	-0.1
4,148,502	+		MIT1002_03714	0.11	+0.8
4,148,533	+		MIT1002_03714	0.13	-2.0
4,148,541	-		MIT1002_03714	0.13	-2.1
4,148,564	+		MIT1002_03714	0.15	+0.6
4,148,704	-		MIT1002_03714	0.23	-2.2
4,148,722	-		MIT1002_03714	0.24	-0.5
4,148,756	+		MIT1002_03714	0.27	-0.3
4,148,758	+		MIT1002_03714	0.27	+0.4
4,148,766	+		MIT1002_03714	0.27	-1.1
4,148,766	-		MIT1002_03714	0.27	+0.2
4,148,766	-		MIT1002_03714	0.27	+1.3
4,148,766	-		MIT1002_03714	0.27	-1.3
4,148,774	-		MIT1002_03714	0.28	-1.6
4,148,784	-		MIT1002_03714	0.28	-0.4
4,148,797	-		MIT1002_03714	0.29	+0.6
4,148,814	+		MIT1002_03714	0.30	-0.2
4,148,828	-		MIT1002_03714	0.31	-1.6
4,148,834	-		MIT1002_03714	0.31	+1.2
4,148,853	-		MIT1002_03714	0.33	-0.9
4,148,868	+		MIT1002_03714	0.34	+0.4
4,148,898	+		MIT1002_03714	0.35	-0.2
4,148,916	+		MIT1002_03714	0.36	-0.2
4,148,924	-		MIT1002_03714	0.37	+1.5
4,148,956	+		MIT1002_03714	0.39	+1.5
4,149,076	+		MIT1002_03714	0.46	-1.4
4,149,114	-		MIT1002_03714	0.49	-0.5
4,149,115	-		MIT1002_03714	0.49	-0.6
4,149,122	+		MIT1002_03714	0.49	+0.0
4,149,211	-		MIT1002_03714	0.55	-0.1
4,149,260	+		MIT1002_03714	0.58	-1.8
4,149,267	-		MIT1002_03714	0.58	-0.6
4,149,299	-		MIT1002_03714	0.60	-0.6
4,149,306	+		MIT1002_03714	0.61	-2.2
4,149,372	+		MIT1002_03714	0.65	+0.7
4,149,387	+		MIT1002_03714	0.66	-1.1
4,149,387	+		MIT1002_03714	0.66	-1.2
4,149,387	+		MIT1002_03714	0.66	-0.3
4,149,390	-		MIT1002_03714	0.66	+0.4
4,149,611	+		MIT1002_03714	0.79	-0.5
4,149,613	-		MIT1002_03714	0.80	+1.8
4,149,615	+		MIT1002_03714	0.80	-0.6
4,149,621	+		MIT1002_03714	0.80	+1.3
4,149,623	-		MIT1002_03714	0.80	-2.3
4,149,728	+		MIT1002_03714	0.87	-1.3
4,149,731	-		MIT1002_03714	0.87	-0.2
4,149,744	+		MIT1002_03714	0.88	-1.2
4,149,794	-				+1.8
4,149,794	-				-0.4
4,149,804	-				+0.0
4,149,818	-				-0.9
4,149,902	+				-1.3
4,149,949	+				-0.6
4,149,949	+				-0.9
4,149,949	+				+2.2
4,149,951	+				-0.3
4,149,957	-				-0.5
4,149,957	-				-0.6
4,149,957	-				+0.4
4,149,957	-				-0.4
4,149,957	-				+0.8
4,149,977	+		MIT1002_03715	0.11	+1.1
4,149,985	-		MIT1002_03715	0.14	-0.7
4,149,985	-		MIT1002_03715	0.14	+0.6
4,150,082	+		MIT1002_03715	0.46	-1.7
4,150,142	-		MIT1002_03715	0.65	+0.1
4,150,144	-		MIT1002_03715	0.66	-0.3
4,150,144	-		MIT1002_03715	0.66	+0.9
4,150,163	-		MIT1002_03715	0.72	-0.3
4,150,168	-		MIT1002_03715	0.74	+0.4
4,150,252	+				-0.8
4,150,301	-				-0.1
4,150,346	+				-0.7
4,150,382	+		MIT1002_03716	0.10	+0.1
4,150,392	-		MIT1002_03716	0.11	+0.8
4,150,401	+		MIT1002_03716	0.11	-0.0
4,150,409	-		MIT1002_03716	0.12	-1.2
4,150,484	+		MIT1002_03716	0.18	+0.8
4,150,492	-		MIT1002_03716	0.18	+1.0
4,150,555	+		MIT1002_03716	0.23	-0.4
4,150,591	-		MIT1002_03716	0.25	+0.2
4,150,607	+		MIT1002_03716	0.26	-0.3
4,150,616	+		MIT1002_03716	0.27	+0.8
4,150,644	-		MIT1002_03716	0.29	+0.5
4,150,665	+		MIT1002_03716	0.31	+1.4
4,150,668	-		MIT1002_03716	0.31	-0.6
4,150,673	-		MIT1002_03716	0.31	-1.1
4,150,711	-		MIT1002_03716	0.34	-0.4
4,150,717	+		MIT1002_03716	0.34	+0.4
4,150,866	+		MIT1002_03716	0.45	-2.0
4,150,884	-		MIT1002_03716	0.47	-1.2
4,150,902	+		MIT1002_03716	0.48	+0.2