Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03562

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,987,330	+		MIT1002_03561	0.64	+0.2
3,987,330	+		MIT1002_03561	0.64	-0.5
3,987,338	-		MIT1002_03561	0.65	+0.8
3,987,338	-		MIT1002_03561	0.65	+1.0
3,987,341	-		MIT1002_03561	0.65	+0.1
3,987,433	+		MIT1002_03561	0.68	+1.0
3,987,437	+		MIT1002_03561	0.68	+0.5
3,987,438	-		MIT1002_03561	0.68	+2.6
3,987,441	-		MIT1002_03561	0.69	-0.4
3,987,441	-		MIT1002_03561	0.69	-0.5
3,987,616	-		MIT1002_03561	0.75	+0.4
3,987,616	-		MIT1002_03561	0.75	+2.9
3,987,626	+		MIT1002_03561	0.75	+0.9
3,987,645	-		MIT1002_03561	0.76	+0.8
3,987,667	+		MIT1002_03561	0.77	+0.5
3,987,771	+		MIT1002_03561	0.81	+2.3
3,987,771	-		MIT1002_03561	0.81	+0.8
3,987,772	-		MIT1002_03561	0.81	+0.9
3,987,782	+		MIT1002_03561	0.81	-0.5
3,987,790	-		MIT1002_03561	0.81	-0.2
3,987,790	-		MIT1002_03561	0.81	+1.4
3,987,794	+		MIT1002_03561	0.81	+1.2
3,987,877	+		MIT1002_03561	0.85	-0.1
3,987,972	-		MIT1002_03561	0.88	+0.3
3,987,994	-		MIT1002_03561	0.89	+0.8
3,988,034	+				+0.1
3,988,048	+				+1.3
3,988,271	+				+2.2
3,988,271	+				+2.2
3,988,279	-				-0.6
3,988,281	+				-0.2
3,988,289	-				+2.0
3,989,033	+				+1.2
3,989,033	+				+0.6
3,989,033	+				-0.9
3,989,041	-				-1.9
3,989,083	+				-0.5
3,989,091	+				-1.3
3,989,091	+				+0.5
3,989,091	+				+0.6
3,989,091	+				+1.4
3,989,093	+				-1.0
3,989,093	+				-0.8
3,989,093	+				+0.1
3,989,093	+				-0.1
3,989,093	+				+0.8
3,989,093	+				-0.5
3,989,096	+				-1.4
3,989,096	-				+0.7
3,989,098	+				-0.4
3,989,098	+				-0.7
3,989,099	-				-1.0
3,989,099	-				-0.5
3,989,099	-				-0.2
3,989,099	-				+0.2
3,989,101	-				+0.6
3,989,101	-				-1.9
3,989,101	-				-0.3
3,989,101	-				+1.6
3,989,101	-				-1.1
3,989,101	-				+1.1
3,989,101	-				-0.9
3,989,101	-				-1.9
3,989,101	-				-0.9
3,989,101	-				-0.9
3,989,101	-				-0.1
3,989,104	-				+1.0
3,989,104	-				-1.4
3,989,111	-				-0.1
3,989,146	+		MIT1002_03563	0.11	+0.2
3,989,147	+		MIT1002_03563	0.11	-0.4
3,989,147	+		MIT1002_03563	0.11	-0.4
3,989,148	+		MIT1002_03563	0.11	+0.8
3,989,148	+		MIT1002_03563	0.11	-0.3
3,989,148	+		MIT1002_03563	0.11	-0.1
3,989,148	+		MIT1002_03563	0.11	+0.6
3,989,148	+		MIT1002_03563	0.11	+1.5
3,989,148	+		MIT1002_03563	0.11	+1.5
3,989,148	+		MIT1002_03563	0.11	-0.2
3,989,148	+		MIT1002_03563	0.11	+0.8
3,989,148	+		MIT1002_03563	0.11	+0.2
3,989,148	+		MIT1002_03563	0.11	-1.5
3,989,148	+		MIT1002_03563	0.11	-0.1
3,989,148	+		MIT1002_03563	0.11	-0.0
3,989,148	+		MIT1002_03563	0.11	-0.3
3,989,148	+		MIT1002_03563	0.11	-2.2
3,989,148	+		MIT1002_03563	0.11	-0.4
3,989,148	+		MIT1002_03563	0.11	+1.8
3,989,148	+		MIT1002_03563	0.11	-0.8
3,989,150	+		MIT1002_03563	0.12	-0.7
3,989,151	-		MIT1002_03563	0.12	-0.1
3,989,155	-		MIT1002_03563	0.12	-0.8
3,989,155	-		MIT1002_03563	0.12	-0.7
3,989,155	-		MIT1002_03563	0.12	-0.5
3,989,155	-		MIT1002_03563	0.12	-0.3
3,989,155	-		MIT1002_03563	0.12	+0.3
3,989,155	-		MIT1002_03563	0.12	-0.2
3,989,156	-		MIT1002_03563	0.12	-0.3
3,989,156	-		MIT1002_03563	0.12	+1.4
3,989,156	-		MIT1002_03563	0.12	+1.5
3,989,156	-		MIT1002_03563	0.12	-0.9
3,989,156	-		MIT1002_03563	0.12	+1.2
3,989,156	-		MIT1002_03563	0.12	+2.3
3,989,156	-		MIT1002_03563	0.12	-0.5
3,989,156	-		MIT1002_03563	0.12	+0.9
3,989,156	-		MIT1002_03563	0.12	+0.5
3,989,156	-		MIT1002_03563	0.12	-0.9
3,989,156	-		MIT1002_03563	0.12	+0.3
3,989,158	-		MIT1002_03563	0.13	+2.2
3,989,159	+		MIT1002_03563	0.13	+0.1
3,989,172	+		MIT1002_03563	0.14	-1.2
3,989,172	+		MIT1002_03563	0.14	-2.3
3,989,178	+		MIT1002_03563	0.15	-1.2
3,989,180	-		MIT1002_03563	0.15	-0.8
3,989,183	+		MIT1002_03563	0.15	+3.3
3,989,183	+		MIT1002_03563	0.15	+1.8
3,989,191	-		MIT1002_03563	0.16	-1.8
3,989,193	+		MIT1002_03563	0.16	+1.1
3,989,193	+		MIT1002_03563	0.16	-0.2
3,989,193	+		MIT1002_03563	0.16	-0.4
3,989,193	+		MIT1002_03563	0.16	-1.1
3,989,193	+		MIT1002_03563	0.16	-0.1
3,989,193	+		MIT1002_03563	0.16	+1.1
3,989,193	+		MIT1002_03563	0.16	+2.1
3,989,193	+		MIT1002_03563	0.16	-0.1
3,989,200	-		MIT1002_03563	0.17	-0.8
3,989,201	-		MIT1002_03563	0.17	-1.3
3,989,201	-		MIT1002_03563	0.17	+1.2
3,989,201	-		MIT1002_03563	0.17	+0.1
3,989,201	-		MIT1002_03563	0.17	-0.4
3,989,201	-		MIT1002_03563	0.17	+1.6
3,989,201	-		MIT1002_03563	0.17	-1.3
3,989,201	-		MIT1002_03563	0.17	+1.2
3,989,201	-		MIT1002_03563	0.17	-1.1
3,989,201	-		MIT1002_03563	0.17	-0.6
3,989,205	-		MIT1002_03563	0.18	+1.7
3,989,205	-		MIT1002_03563	0.18	+0.3
3,989,207	+		MIT1002_03563	0.18	+1.6
3,989,211	-		MIT1002_03563	0.18	-0.1
3,989,215	-		MIT1002_03563	0.19	+0.4
3,989,230	+		MIT1002_03563	0.21	+0.7
3,989,253	-		MIT1002_03563	0.23	-0.8
3,989,262	+		MIT1002_03563	0.24	+0.8
3,989,276	+		MIT1002_03563	0.26	+1.3
3,989,276	+		MIT1002_03563	0.26	-0.6
3,989,281	+		MIT1002_03563	0.26	-0.9
3,989,286	-		MIT1002_03563	0.27	-0.4
3,989,286	-		MIT1002_03563	0.27	-0.7
3,989,326	+		MIT1002_03563	0.31	+0.3
3,989,326	+		MIT1002_03563	0.31	-0.6
3,989,331	+		MIT1002_03563	0.32	-0.1
3,989,331	+		MIT1002_03563	0.32	+0.2
3,989,331	+		MIT1002_03563	0.32	-0.5
3,989,331	+		MIT1002_03563	0.32	+1.0
3,989,334	-		MIT1002_03563	0.32	+1.0
3,989,334	-		MIT1002_03563	0.32	+0.2
3,989,339	-		MIT1002_03563	0.33	-2.1
3,989,339	-		MIT1002_03563	0.33	+1.2
3,989,339	-		MIT1002_03563	0.33	+0.6
3,989,339	-		MIT1002_03563	0.33	+1.3
3,989,339	-		MIT1002_03563	0.33	+0.9
3,989,349	-		MIT1002_03563	0.34	-0.8
3,989,350	+		MIT1002_03563	0.34	-0.8
3,989,355	+		MIT1002_03563	0.34	+0.6
3,989,355	+		MIT1002_03563	0.34	-0.0
3,989,363	-		MIT1002_03563	0.35	+1.7
3,989,366	+		MIT1002_03563	0.36	-0.7
3,989,366	+		MIT1002_03563	0.36	-1.1
3,989,368	-		MIT1002_03563	0.36	+0.5
3,989,381	+		MIT1002_03563	0.37	+2.6
3,989,411	+		MIT1002_03563	0.41	-1.0
3,989,417	-		MIT1002_03563	0.41	-0.9
3,989,417	-		MIT1002_03563	0.41	-0.2
3,989,447	+		MIT1002_03563	0.45	+1.1
3,989,452	+		MIT1002_03563	0.45	+0.1
3,989,452	+		MIT1002_03563	0.45	+1.4
3,989,455	-		MIT1002_03563	0.46	+1.9
3,989,455	-		MIT1002_03563	0.46	-0.7
3,989,457	+		MIT1002_03563	0.46	-0.2
3,989,457	+		MIT1002_03563	0.46	+0.5
3,989,457	+		MIT1002_03563	0.46	-1.1
3,989,457	+		MIT1002_03563	0.46	-0.1
3,989,460	-		MIT1002_03563	0.46	-0.4
3,989,460	-		MIT1002_03563	0.46	+0.6
3,989,460	-		MIT1002_03563	0.46	-1.3
3,989,465	-		MIT1002_03563	0.47	-0.1
3,989,465	-		MIT1002_03563	0.47	-2.0
3,989,517	-		MIT1002_03563	0.52	+2.2
3,989,521	-		MIT1002_03563	0.53	+0.2
3,989,522	-		MIT1002_03563	0.53	-0.4
3,989,527	-		MIT1002_03563	0.54	+0.1
3,989,536	+		MIT1002_03563	0.55	-0.0
3,989,536	+		MIT1002_03563	0.55	-0.1
3,989,536	+		MIT1002_03563	0.55	-0.6
3,989,536	+		MIT1002_03563	0.55	-1.6
3,989,536	+		MIT1002_03563	0.55	-0.4
3,989,536	+		MIT1002_03563	0.55	-1.8
3,989,544	-		MIT1002_03563	0.55	-0.9
3,989,544	-		MIT1002_03563	0.55	+0.3
3,989,547	+		MIT1002_03563	0.56	-0.6
3,989,547	+		MIT1002_03563	0.56	+0.6
3,989,547	+		MIT1002_03563	0.56	+1.4
3,989,547	+		MIT1002_03563	0.56	-0.5
3,989,547	+		MIT1002_03563	0.56	-0.8
3,989,547	+		MIT1002_03563	0.56	+2.6
3,989,547	+		MIT1002_03563	0.56	+0.7
3,989,555	-		MIT1002_03563	0.57	-0.6
3,989,555	-		MIT1002_03563	0.57	-2.1
3,989,555	-		MIT1002_03563	0.57	+0.9
3,989,555	-		MIT1002_03563	0.57	-0.1
3,989,555	-		MIT1002_03563	0.57	-0.6
3,989,555	-		MIT1002_03563	0.57	+0.8
3,989,555	-		MIT1002_03563	0.57	+0.1
3,989,590	-		MIT1002_03563	0.61	+0.1
3,989,595	-		MIT1002_03563	0.61	+0.7
3,989,605	-		MIT1002_03563	0.62	-0.4
3,989,626	+		MIT1002_03563	0.65	-0.2
3,989,630	-		MIT1002_03563	0.65	-1.4
3,989,634	-		MIT1002_03563	0.65	+0.1
3,989,649	+		MIT1002_03563	0.67	-0.5
3,989,649	+		MIT1002_03563	0.67	-1.8
3,989,649	+		MIT1002_03563	0.67	+1.6
3,989,649	+		MIT1002_03563	0.67	-1.1
3,989,649	+		MIT1002_03563	0.67	-0.2
3,989,649	+		MIT1002_03563	0.67	+0.6
3,989,649	+		MIT1002_03563	0.67	-0.7
3,989,649	+		MIT1002_03563	0.67	-0.3
3,989,649	+		MIT1002_03563	0.67	-1.2
3,989,649	-		MIT1002_03563	0.67	-0.8
3,989,657	-		MIT1002_03563	0.68	+1.2
3,989,668	-		MIT1002_03563	0.69	+1.1
3,989,668	-		MIT1002_03563	0.69	-1.4
3,989,697	+		MIT1002_03563	0.72	+0.3
3,989,716	+		MIT1002_03563	0.75	-1.4
3,989,716	-		MIT1002_03563	0.75	-1.8
3,989,724	-		MIT1002_03563	0.75	-0.9
3,989,740	+		MIT1002_03563	0.77	+1.2
3,989,776	+		MIT1002_03563	0.81	-2.2
3,989,776	+		MIT1002_03563	0.81	-1.8
3,989,776	+		MIT1002_03563	0.81	-0.4
3,989,776	+		MIT1002_03563	0.81	-0.1
3,989,776	+		MIT1002_03563	0.81	+0.6
3,989,780	-		MIT1002_03563	0.82	-0.9
3,989,784	-		MIT1002_03563	0.82	+0.5
3,989,784	-		MIT1002_03563	0.82	-1.2
3,989,784	-		MIT1002_03563	0.82	+2.1
3,989,789	+		MIT1002_03563	0.83	-1.8
3,989,789	+		MIT1002_03563	0.83	+1.9
3,989,789	+		MIT1002_03563	0.83	+1.3
3,989,789	+		MIT1002_03563	0.83	-1.2
3,989,792	-		MIT1002_03563	0.83	+1.1
3,989,797	-		MIT1002_03563	0.84	-0.3
3,989,798	-		MIT1002_03563	0.84	-0.5
3,989,798	-		MIT1002_03563	0.84	-0.5
3,989,798	-		MIT1002_03563	0.84	+0.1
3,989,811	+		MIT1002_03563	0.85	-0.3
3,989,819	-		MIT1002_03563	0.86	-1.1
3,989,819	-		MIT1002_03563	0.86	+1.0
3,989,819	-		MIT1002_03563	0.86	+0.2
3,989,819	-		MIT1002_03563	0.86	-0.4
3,989,822	+		MIT1002_03563	0.86	-0.3
3,989,867	+				+1.6
3,989,875	-				+0.8
3,989,887	+				+0.5
3,989,894	+				+0.3
3,989,895	+				-1.1
3,989,904	+				+0.6
3,989,904	+				-0.1
3,989,904	+				-3.1
3,989,904	+				+0.3
3,989,904	+				-0.5
3,989,912	-				+0.2
3,989,912	-				-1.8
3,989,914	+				+0.4
3,989,920	+				-0.1
3,989,925	+				+1.5
3,989,925	+				-0.8
3,989,925	+				+0.6
3,989,933	-				-1.2
3,989,937	+				-0.3
3,989,961	+				-1.6
3,990,000	+				-2.5
3,990,002	-				-0.7
3,990,013	+				-0.4
3,990,026	-				-1.4
3,990,026	-				-0.2
3,990,028	-				-1.6
3,990,029	+				-0.9
3,990,030	+				+0.4
3,990,036	-				+0.9
3,990,036	-				-0.6