Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03439

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,844,155	+		MIT1002_03438	0.56	-0.1
3,844,192	-		MIT1002_03438	0.58	-0.3
3,844,194	+		MIT1002_03438	0.58	+0.6
3,844,236	-		MIT1002_03438	0.59	-1.6
3,844,281	+		MIT1002_03438	0.61	-0.2
3,844,352	+		MIT1002_03438	0.65	-1.9
3,844,362	+		MIT1002_03438	0.65	-0.8
3,844,370	-		MIT1002_03438	0.65	-0.5
3,844,391	-		MIT1002_03438	0.66	-0.0
3,844,495	+		MIT1002_03438	0.71	-0.1
3,844,608	+		MIT1002_03438	0.76	-0.1
3,844,608	+		MIT1002_03438	0.76	+0.6
3,844,616	-		MIT1002_03438	0.76	-0.7
3,844,616	-		MIT1002_03438	0.76	-0.8
3,844,616	-		MIT1002_03438	0.76	-0.2
3,844,616	-		MIT1002_03438	0.76	+0.0
3,844,616	-		MIT1002_03438	0.76	-1.8
3,844,616	-		MIT1002_03438	0.76	-0.9
3,844,767	-		MIT1002_03438	0.83	+1.6
3,844,776	+		MIT1002_03438	0.83	-0.9
3,844,776	+		MIT1002_03438	0.83	-1.7
3,844,779	-		MIT1002_03438	0.83	+2.1
3,844,781	+		MIT1002_03438	0.83	-0.0
3,844,784	-		MIT1002_03438	0.84	+0.5
3,844,807	+		MIT1002_03438	0.85	-0.9
3,844,826	+		MIT1002_03438	0.85	-1.0
3,844,830	+		MIT1002_03438	0.86	+0.3
3,844,866	-		MIT1002_03438	0.87	+0.3
3,844,868	+		MIT1002_03438	0.87	-2.1
3,844,953	-				-0.8
3,844,955	+				+0.1
3,844,960	+				+0.5
3,844,968	-				+0.5
3,844,968	-				-0.3
3,844,968	-				-1.6
3,844,982	+				-0.5
3,844,990	-				-1.2
3,844,990	-				-1.4
3,844,990	-				+0.9
3,844,990	-				+0.2
3,845,102	-				+0.1
3,845,108	+				-1.1
3,845,116	-				+1.0
3,845,116	-				-0.7
3,845,125	+				+1.9
3,845,191	-				+1.8
3,845,289	-				+0.1
3,845,294	-				-0.3
3,845,300	-				+0.1
3,845,328	+				+0.9
3,845,328	+				-0.4
3,845,338	-				-1.3
3,845,338	-				+0.3
3,845,338	-				+0.6
3,845,340	+				-0.2
3,845,340	+				+0.4
3,845,340	-				+0.2
3,845,348	-				+0.6
3,845,375	+				+1.5
3,845,458	-		MIT1002_03439	0.14	-0.7
3,845,513	-		MIT1002_03439	0.16	-0.4
3,845,602	+		MIT1002_03439	0.20	-0.9
3,845,642	-		MIT1002_03439	0.22	+1.6
3,845,655	-		MIT1002_03439	0.22	-0.7
3,845,669	-		MIT1002_03439	0.23	-1.1
3,845,674	-		MIT1002_03439	0.23	-0.5
3,845,738	+		MIT1002_03439	0.26	+0.8
3,845,746	+		MIT1002_03439	0.27	-1.3
3,845,746	-		MIT1002_03439	0.27	-0.7
3,845,754	-		MIT1002_03439	0.27	+1.3
3,845,756	+		MIT1002_03439	0.27	+0.2
3,845,761	+		MIT1002_03439	0.27	-0.1
3,845,769	-		MIT1002_03439	0.28	-0.8
3,845,806	+		MIT1002_03439	0.29	-2.0
3,845,814	-		MIT1002_03439	0.30	-0.5
3,845,839	+		MIT1002_03439	0.31	-0.8
3,845,844	-		MIT1002_03439	0.31	+1.2
3,845,888	+		MIT1002_03439	0.33	-0.0
3,845,928	-		MIT1002_03439	0.35	-1.6
3,845,928	-		MIT1002_03439	0.35	-0.3
3,845,928	-		MIT1002_03439	0.35	-0.5
3,845,928	-		MIT1002_03439	0.35	+3.5
3,845,944	+		MIT1002_03439	0.35	+0.1
3,845,944	+		MIT1002_03439	0.35	+0.7
3,845,946	-		MIT1002_03439	0.36	+2.6
3,845,960	-		MIT1002_03439	0.36	-4.2
3,846,107	+		MIT1002_03439	0.43	+0.0
3,846,107	+		MIT1002_03439	0.43	-1.0
3,846,117	+		MIT1002_03439	0.43	+0.3
3,846,136	+		MIT1002_03439	0.44	+1.1
3,846,136	+		MIT1002_03439	0.44	+1.0
3,846,223	+		MIT1002_03439	0.48	+0.8
3,846,261	+		MIT1002_03439	0.50	+0.5
3,846,261	+		MIT1002_03439	0.50	-0.5
3,846,276	+		MIT1002_03439	0.50	+0.7
3,846,284	-		MIT1002_03439	0.51	-0.6
3,846,395	-		MIT1002_03439	0.56	-0.5
3,846,438	+		MIT1002_03439	0.58	+1.2
3,846,439	+		MIT1002_03439	0.58	-0.2
3,846,439	+		MIT1002_03439	0.58	-0.1
3,846,461	-		MIT1002_03439	0.59	-0.8
3,846,533	-		MIT1002_03439	0.62	+0.5
3,846,568	-		MIT1002_03439	0.63	+1.8
3,846,669	+		MIT1002_03439	0.68	-2.2
3,846,679	+		MIT1002_03439	0.68	-1.7
3,846,724	-		MIT1002_03439	0.70	-0.4
3,846,733	+		MIT1002_03439	0.71	-0.1
3,846,733	+		MIT1002_03439	0.71	+0.3
3,846,740	+		MIT1002_03439	0.71	-0.5
3,846,740	+		MIT1002_03439	0.71	+0.9
3,846,741	-		MIT1002_03439	0.71	+2.2
3,846,741	-		MIT1002_03439	0.71	-0.2
3,846,748	-		MIT1002_03439	0.72	+0.4
3,846,748	-		MIT1002_03439	0.72	+2.1
3,846,748	-		MIT1002_03439	0.72	+1.6
3,846,774	+		MIT1002_03439	0.73	+0.5
3,846,820	-		MIT1002_03439	0.75	-1.3
3,846,910	+		MIT1002_03439	0.79	+1.7
3,846,942	+		MIT1002_03439	0.80	+0.4
3,846,942	+		MIT1002_03439	0.80	+6.3
3,846,942	+		MIT1002_03439	0.80	-0.8
3,846,950	-		MIT1002_03439	0.81	-1.8
3,846,955	-		MIT1002_03439	0.81	+0.1
3,846,975	+		MIT1002_03439	0.82	-0.2
3,846,982	+		MIT1002_03439	0.82	-0.1
3,847,112	-		MIT1002_03439	0.88	+1.6
3,847,188	-				-0.9
3,847,225	-				-0.7
3,847,240	+				-1.1
3,847,305	+				+1.5
3,847,331	+				-0.3
3,847,346	+				-1.4
3,847,346	+				+0.3
3,847,346	+				-0.4
3,847,354	-				-0.7
3,847,354	-				+1.5
3,847,354	-				+0.3
3,847,356	+				-0.6
3,847,364	-				+0.9
3,847,375	+				+0.7
3,847,754	+		MIT1002_03440	0.69	-3.2
3,847,754	+		MIT1002_03440	0.69	+0.5
3,847,754	+		MIT1002_03440	0.69	-1.3
3,847,762	-		MIT1002_03440	0.71	-1.8
3,847,948	+				+0.9
3,847,954	-				-2.9
3,847,954	-				+0.9
3,847,954	-				-3.4
3,847,964	-				+0.7
3,848,092	+				+0.7
3,848,170	+				+0.1
3,848,170	+				-1.0
3,848,184	+				-0.9
3,848,222	+				+1.3
3,848,222	+				-0.5
3,848,230	-				-1.2
3,848,237	-				+0.2
3,848,315	-		MIT1002_03441	0.18	+1.2