Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03405

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,809,595	+		MIT1002_03404	0.60	+0.3
3,809,622	-		MIT1002_03404	0.61	-1.3
3,809,739	-		MIT1002_03404	0.69	-0.1
3,809,763	+		MIT1002_03404	0.71	+0.9
3,809,776	-		MIT1002_03404	0.71	-0.2
3,809,804	+		MIT1002_03404	0.73	-1.7
3,809,863	+		MIT1002_03404	0.77	+0.2
3,809,868	+		MIT1002_03404	0.77	+0.2
3,809,875	+		MIT1002_03404	0.78	-0.3
3,809,875	+		MIT1002_03404	0.78	+0.0
3,809,893	+		MIT1002_03404	0.79	+0.7
3,809,901	-		MIT1002_03404	0.79	-0.8
3,809,908	-		MIT1002_03404	0.80	-0.1
3,809,936	+		MIT1002_03404	0.82	+1.3
3,809,999	+		MIT1002_03404	0.86	+0.2
3,810,005	+		MIT1002_03404	0.86	-0.6
3,810,005	+		MIT1002_03404	0.86	-0.2
3,810,005	+		MIT1002_03404	0.86	-0.6
3,810,005	+		MIT1002_03404	0.86	-2.1
3,810,013	-		MIT1002_03404	0.87	-0.2
3,810,013	-		MIT1002_03404	0.87	-1.2
3,810,013	-		MIT1002_03404	0.87	+2.7
3,810,023	-		MIT1002_03404	0.87	-0.7
3,810,069	-				+0.2
3,810,118	-				-0.3
3,810,613	-		MIT1002_03405	0.10	-0.1
3,810,673	+		MIT1002_03405	0.34	-0.3
3,810,681	-		MIT1002_03405	0.37	-1.0
3,810,699	+		MIT1002_03405	0.44	+0.0
3,810,708	+		MIT1002_03405	0.47	+0.5
3,810,708	+		MIT1002_03405	0.47	+1.1
3,810,708	+		MIT1002_03405	0.47	-0.4
3,810,708	+		MIT1002_03405	0.47	+0.7
3,810,708	+		MIT1002_03405	0.47	-1.0
3,810,716	-		MIT1002_03405	0.50	+0.3
3,810,716	-		MIT1002_03405	0.50	+0.4
3,810,716	-		MIT1002_03405	0.50	+0.1
3,810,716	-		MIT1002_03405	0.50	+1.0
3,810,716	-		MIT1002_03405	0.50	-0.9
3,810,716	-		MIT1002_03405	0.50	+1.1
3,810,818	-				+2.4
3,810,819	-				+1.6
3,810,918	-				+0.8
3,810,988	-				-1.4
3,810,995	+				+0.5
3,810,998	-				+0.0
3,811,019	+				+0.8
3,811,024	+				-1.4
3,811,026	+				+0.7
3,811,026	+				+0.7
3,811,026	+				-1.2
3,811,034	-				-0.1
3,811,034	-				+1.0
3,811,036	+				-0.1
3,811,036	+				-0.0
3,811,036	+				-1.0
3,811,037	+				-0.5
3,811,037	+				-0.4
3,811,037	+				-1.7
3,811,038	+				+0.1
3,811,044	-				+0.3
3,811,044	-				+1.1
3,811,045	-				+0.0
3,811,045	-				-1.5
3,811,045	-				+2.1
3,811,045	-				-1.3
3,811,053	-				-0.6
3,811,085	-		MIT1002_03406	0.19	-0.8
3,811,097	+		MIT1002_03406	0.23	-0.6
3,811,160	+		MIT1002_03406	0.43	-0.9
3,811,168	-		MIT1002_03406	0.46	+0.6
3,811,216	-		MIT1002_03406	0.61	+0.2
3,811,218	+		MIT1002_03406	0.62	-1.8
3,811,226	-		MIT1002_03406	0.64	+0.3
3,811,238	-		MIT1002_03406	0.68	+0.0
3,811,266	+		MIT1002_03406	0.77	+0.7
3,811,273	-		MIT1002_03406	0.80	+1.3
3,811,273	-		MIT1002_03406	0.80	+0.9
3,811,296	+		MIT1002_03406	0.87	-1.3
3,811,304	-		MIT1002_03406	0.90	+0.8
3,811,306	-				-1.0
3,811,356	+				-1.9
3,811,359	-				-0.7
3,811,361	+				-0.6
3,811,387	-				+1.1
3,811,413	-				-2.3
3,811,434	-				+0.9
3,811,520	+				-2.3
3,811,528	-				+0.2
3,811,532	-				-0.7
3,811,538	-				-0.5
3,811,600	+				-1.0
3,811,608	-				-0.7
3,811,797	-		MIT1002_03407	0.15	+0.5
3,811,799	+		MIT1002_03407	0.16	-0.6
3,811,799	+		MIT1002_03407	0.16	+0.0
3,811,807	-		MIT1002_03407	0.20	-0.5
3,811,807	-		MIT1002_03407	0.20	+0.2
3,811,834	+		MIT1002_03407	0.31	-1.6