Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03349

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,744,290	+		MIT1002_03348	0.55	+1.1
3,744,290	+		MIT1002_03348	0.55	+1.8
3,744,293	-		MIT1002_03348	0.55	+0.1
3,744,322	+		MIT1002_03348	0.56	-1.5
3,744,353	-		MIT1002_03348	0.58	-0.3
3,744,386	+		MIT1002_03348	0.59	+0.9
3,744,413	+		MIT1002_03348	0.60	-2.2
3,744,413	+		MIT1002_03348	0.60	+0.3
3,744,419	-		MIT1002_03348	0.61	-0.1
3,744,421	-		MIT1002_03348	0.61	+0.5
3,744,421	-		MIT1002_03348	0.61	-0.1
3,744,421	-		MIT1002_03348	0.61	-0.3
3,744,421	-		MIT1002_03348	0.61	+0.6
3,744,421	-		MIT1002_03348	0.61	-0.7
3,744,421	-		MIT1002_03348	0.61	+11.2
3,744,421	-		MIT1002_03348	0.61	-0.3
3,744,471	+		MIT1002_03348	0.63	-1.1
3,744,518	+		MIT1002_03348	0.65	+0.2
3,744,548	+		MIT1002_03348	0.66	+0.3
3,744,556	-		MIT1002_03348	0.67	-0.8
3,744,581	+		MIT1002_03348	0.68	-0.9
3,744,598	+		MIT1002_03348	0.69	+0.3
3,744,608	+		MIT1002_03348	0.69	+1.2
3,744,633	-		MIT1002_03348	0.70	+2.7
3,744,690	+		MIT1002_03348	0.73	-1.2
3,744,826	+		MIT1002_03348	0.79	+0.6
3,744,834	-		MIT1002_03348	0.79	+1.9
3,744,834	-		MIT1002_03348	0.79	-0.1
3,744,904	-		MIT1002_03348	0.83	-0.3
3,745,293	-				-0.3
3,745,350	+		MIT1002_03349	0.10	+0.6
3,745,350	+		MIT1002_03349	0.10	-1.3
3,745,421	+		MIT1002_03349	0.20	-0.3
3,745,423	+		MIT1002_03349	0.20	+0.5
3,745,423	+		MIT1002_03349	0.20	-0.9
3,745,431	-		MIT1002_03349	0.22	+0.9
3,745,462	+		MIT1002_03349	0.26	+0.1
3,745,514	-		MIT1002_03349	0.33	+0.1
3,745,583	+		MIT1002_03349	0.43	-1.0
3,745,583	+		MIT1002_03349	0.43	+0.1
3,745,591	-		MIT1002_03349	0.44	-0.7
3,745,591	-		MIT1002_03349	0.44	-0.7
3,745,591	-		MIT1002_03349	0.44	-1.1
3,745,607	+		MIT1002_03349	0.46	-2.5
3,745,610	-		MIT1002_03349	0.47	+1.0
3,745,615	-		MIT1002_03349	0.47	+0.7
3,745,615	-		MIT1002_03349	0.47	+0.4
3,745,615	-		MIT1002_03349	0.47	-0.2
3,745,615	-		MIT1002_03349	0.47	+0.7
3,745,625	-		MIT1002_03349	0.49	+0.1
3,745,629	-		MIT1002_03349	0.49	-1.0
3,745,652	+		MIT1002_03349	0.53	-1.5
3,745,653	-		MIT1002_03349	0.53	+1.1
3,745,655	-		MIT1002_03349	0.53	+1.0
3,745,862	+		MIT1002_03349	0.82	-0.9
3,745,867	+		MIT1002_03349	0.83	+0.3
3,745,867	+		MIT1002_03349	0.83	+0.5
3,745,869	+		MIT1002_03349	0.83	+0.8
3,745,875	-		MIT1002_03349	0.84	-1.2
3,745,971	-				-0.3
3,745,998	+				-0.4
3,746,030	-				+1.0
3,746,061	+				-0.4
3,746,066	+				-0.3
3,746,066	+				+0.2
3,746,066	+				+0.5
3,746,066	+				+1.6
3,746,066	+				-0.0
3,746,066	+				-1.5
3,746,066	+				-0.6
3,746,074	-				-4.8
3,746,074	-				+0.8
3,746,074	-				+2.0
3,746,074	-				-2.1
3,746,074	-				+1.4
3,746,074	-				+0.7
3,746,074	-				-2.5
3,746,221	+		MIT1002_03350	0.15	+0.6
3,746,221	+		MIT1002_03350	0.15	-1.4
3,746,227	-		MIT1002_03350	0.16	-0.8
3,746,277	-		MIT1002_03350	0.21	-1.9
3,746,327	+		MIT1002_03350	0.26	+1.4
3,746,357	-		MIT1002_03350	0.29	-0.3
3,746,357	-		MIT1002_03350	0.29	-1.9
3,746,357	-		MIT1002_03350	0.29	+0.3
3,746,359	+		MIT1002_03350	0.30	-0.4
3,746,359	+		MIT1002_03350	0.30	-1.5
3,746,359	+		MIT1002_03350	0.30	+1.9
3,746,367	-		MIT1002_03350	0.30	-1.9
3,746,367	-		MIT1002_03350	0.30	+0.2
3,746,367	-		MIT1002_03350	0.30	-0.5
3,746,369	+		MIT1002_03350	0.31	-2.2
3,746,579	-		MIT1002_03350	0.52	-2.6
3,746,625	-		MIT1002_03350	0.57	-0.6
3,746,632	+		MIT1002_03350	0.57	-1.7
3,746,632	+		MIT1002_03350	0.57	+0.4
3,746,640	-		MIT1002_03350	0.58	-0.9
3,746,658	+		MIT1002_03350	0.60	-1.7
3,746,658	+		MIT1002_03350	0.60	+0.1
3,746,666	-		MIT1002_03350	0.61	-1.1
3,746,668	+		MIT1002_03350	0.61	-1.6
3,746,678	+		MIT1002_03350	0.62	+0.5
3,746,723	-		MIT1002_03350	0.67	-0.1
3,746,774	-		MIT1002_03350	0.72	-2.0
3,746,819	-		MIT1002_03350	0.76	+0.5
3,746,819	-		MIT1002_03350	0.76	-0.6
3,746,953	-				+0.2
3,746,958	-				-0.8
3,746,980	-				-3.2