Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03174

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,535,959	+		MIT1002_03172	0.80	-0.1
3,535,967	-		MIT1002_03172	0.80	+4.1
3,536,076	+		MIT1002_03172	0.87	-0.5
3,536,076	+		MIT1002_03172	0.87	+0.7
3,536,084	-		MIT1002_03172	0.87	+1.5
3,536,084	-		MIT1002_03172	0.87	-0.3
3,536,084	-		MIT1002_03172	0.87	-2.3
3,536,084	-		MIT1002_03172	0.87	-0.2
3,536,084	-		MIT1002_03172	0.87	+0.3
3,536,122	+		MIT1002_03172	0.89	+0.2
3,536,130	-		MIT1002_03172	0.90	+0.6
3,536,130	-		MIT1002_03172	0.90	+0.7
3,536,130	-		MIT1002_03172	0.90	-0.2
3,536,147	+				-0.6
3,536,167	-				-0.1
3,536,168	-				-0.0
3,536,212	+				-0.2
3,536,276	+				-0.1
3,536,289	+				-0.4
3,536,773	-				-0.9
3,536,787	+				-1.2
3,536,800	+				+0.4
3,536,810	-				-2.7
3,536,813	-				-1.1
3,536,850	+				-0.2
3,536,850	+				+0.8
3,536,857	+				-1.0
3,536,858	-				+1.5
3,536,858	-				+0.6
3,536,858	-				-0.8
3,536,858	-				+1.7
3,536,872	+				-0.2
3,536,924	+				-1.5
3,536,988	-		MIT1002_03174	0.31	-0.5
3,537,056	+		MIT1002_03174	0.67	+0.3
3,537,056	-		MIT1002_03174	0.67	-0.2
3,537,059	+		MIT1002_03174	0.68	-1.2
3,537,228	-				-1.2
3,537,268	-		MIT1002_03175	0.13	-1.1
3,537,306	-		MIT1002_03175	0.18	+0.3
3,537,328	+		MIT1002_03175	0.21	-1.0
3,537,333	+		MIT1002_03175	0.22	-0.3
3,537,354	+		MIT1002_03175	0.25	-0.9
3,537,379	+		MIT1002_03175	0.28	+0.7
3,537,379	-		MIT1002_03175	0.28	-0.4
3,537,379	-		MIT1002_03175	0.28	-0.6
3,537,429	+		MIT1002_03175	0.35	+0.9
3,537,502	+		MIT1002_03175	0.46	-0.7
3,537,552	-		MIT1002_03175	0.53	-1.7
3,537,644	-		MIT1002_03175	0.66	+0.3
3,537,644	-		MIT1002_03175	0.66	+1.3
3,537,695	+		MIT1002_03175	0.73	+0.6
3,537,717	-		MIT1002_03175	0.76	-1.3
3,537,719	+		MIT1002_03175	0.77	-1.4
3,537,740	+		MIT1002_03175	0.80	-0.5
3,537,889	-				+0.8
3,537,961	+				+0.9
3,537,969	-				+1.2
3,538,012	+				-1.0
3,538,012	+				-1.3
3,538,022	+				-0.6
3,538,073	+				+0.0
3,538,083	-				+1.0