Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02817

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
3,121,009	+				+0.3
3,121,035	-				-0.5
3,121,164	-		MIT1002_02815	0.55	-1.0
3,121,166	+		MIT1002_02815	0.56	+1.9
3,121,172	+		MIT1002_02815	0.58	-0.2
3,121,174	-		MIT1002_02815	0.59	-0.0
3,121,279	+				-0.2
3,121,381	+				-0.0
3,121,386	+				+0.3
3,121,389	-				-0.8
3,121,394	-				-1.3
3,121,400	+				+0.8
3,121,417	+				+0.4
3,121,447	+				+0.5
3,121,453	-				+0.2
3,121,493	+				+0.5
3,121,496	-				+1.1
3,121,564	+				-0.4
3,121,574	+				+1.1
3,121,583	-				-0.0
3,121,631	+		MIT1002_02816	0.19	+2.6
3,121,655	+		MIT1002_02816	0.26	-0.5
3,121,663	-		MIT1002_02816	0.28	+0.6
3,121,684	+		MIT1002_02816	0.33	+0.6
3,121,684	+		MIT1002_02816	0.33	-0.4
3,121,684	+		MIT1002_02816	0.33	+0.9
3,121,696	+		MIT1002_02816	0.36	+0.3
3,121,697	-		MIT1002_02816	0.36	-0.1
3,121,739	-		MIT1002_02816	0.47	+1.1
3,121,821	+		MIT1002_02816	0.68	-0.8
3,121,821	+		MIT1002_02816	0.68	+0.4
3,121,821	+		MIT1002_02816	0.68	+0.0
3,121,821	+		MIT1002_02816	0.68	+0.7
3,121,821	+		MIT1002_02816	0.68	-0.1
3,121,829	-		MIT1002_02816	0.70	-0.9
3,121,829	-		MIT1002_02816	0.70	+0.3
3,122,031	+				+1.2
3,122,039	-		MIT1002_02817	0.10	-0.4
3,122,123	-		MIT1002_02817	0.23	+0.3
3,122,140	-		MIT1002_02817	0.25	-0.5
3,122,161	+		MIT1002_02817	0.28	-1.1
3,122,229	+		MIT1002_02817	0.38	-0.4
3,122,229	+		MIT1002_02817	0.38	-1.3
3,122,362	+		MIT1002_02817	0.58	+0.9
3,122,517	+		MIT1002_02817	0.81	+1.1
3,122,519	+		MIT1002_02817	0.81	+0.3
3,122,529	+		MIT1002_02817	0.82	+0.5
3,122,545	+		MIT1002_02817	0.85	+0.3
3,122,600	+				+0.1
3,122,600	+				+0.6
3,122,711	+				-0.8
3,122,760	-				-0.0
3,122,762	+				+1.4
3,122,762	+				+0.1
3,122,762	+				+0.6
3,122,762	+				-0.7
3,122,762	+				+0.2
3,122,770	-				+1.9
3,122,770	-				+0.3
3,122,770	-				-0.1
3,122,770	-				-0.2
3,122,775	+				-0.8
3,122,781	-				+1.6
3,122,815	-				+0.8
3,122,863	-				-0.0
3,122,915	+		MIT1002_02818	0.11	+1.2
3,122,915	+		MIT1002_02818	0.11	-0.5
3,122,973	+		MIT1002_02818	0.17	-0.6
3,122,981	-		MIT1002_02818	0.17	+0.4
3,122,985	+		MIT1002_02818	0.18	+0.8
3,122,985	+		MIT1002_02818	0.18	+0.2
3,122,985	+		MIT1002_02818	0.18	-0.8
3,123,188	+		MIT1002_02818	0.37	-1.9
3,123,258	-		MIT1002_02818	0.44	+0.4
3,123,284	-		MIT1002_02818	0.46	+0.1
3,123,290	-		MIT1002_02818	0.47	-1.3
3,123,373	+		MIT1002_02818	0.55	+0.1
3,123,420	+		MIT1002_02818	0.59	-0.0
3,123,420	+		MIT1002_02818	0.59	+0.3
3,123,420	+		MIT1002_02818	0.59	-0.0
3,123,420	+		MIT1002_02818	0.59	-0.4
3,123,420	+		MIT1002_02818	0.59	+0.4
3,123,420	+		MIT1002_02818	0.59	+0.1
3,123,428	-		MIT1002_02818	0.60	+1.0
3,123,428	-		MIT1002_02818	0.60	+0.9
3,123,428	-		MIT1002_02818	0.60	-1.1
3,123,428	-		MIT1002_02818	0.60	-0.3
3,123,428	-		MIT1002_02818	0.60	+1.1
3,123,428	-		MIT1002_02818	0.60	+0.1
3,123,428	-		MIT1002_02818	0.60	+1.4
3,123,428	-		MIT1002_02818	0.60	+1.5
3,123,428	-		MIT1002_02818	0.60	+0.2
3,123,428	-		MIT1002_02818	0.60	+1.0
3,123,432	+		MIT1002_02818	0.60	-0.5
3,123,432	+		MIT1002_02818	0.60	+0.7
3,123,432	+		MIT1002_02818	0.60	-0.9
3,123,432	+		MIT1002_02818	0.60	-0.9
3,123,440	-		MIT1002_02818	0.61	-0.4
3,123,440	-		MIT1002_02818	0.61	-0.4
3,123,440	-		MIT1002_02818	0.61	-0.8
3,123,471	+		MIT1002_02818	0.64	-2.6
3,123,524	-		MIT1002_02818	0.69	+0.5
3,123,566	-		MIT1002_02818	0.73	-0.7
3,123,594	+		MIT1002_02818	0.75	+1.2
3,123,599	+		MIT1002_02818	0.76	-0.8
3,123,599	+		MIT1002_02818	0.76	+0.1
3,123,607	-		MIT1002_02818	0.77	-0.9
3,123,607	-		MIT1002_02818	0.77	-3.3
3,123,607	-		MIT1002_02818	0.77	-2.1
3,123,607	-		MIT1002_02818	0.77	-1.8
3,123,607	-		MIT1002_02818	0.77	+0.4