Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02770

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_02765 and MIT1002_02766 are separated by 42 nucleotidesMIT1002_02766 and MIT1002_02767 are separated by 7 nucleotidesMIT1002_02767 and MIT1002_02768 are separated by 88 nucleotidesMIT1002_02768 and MIT1002_02769 are separated by 24 nucleotidesMIT1002_02769 and MIT1002_02770 are separated by 346 nucleotidesMIT1002_02770 and MIT1002_02771 are separated by 105 nucleotidesMIT1002_02771 and MIT1002_02772 are separated by 238 nucleotides MIT1002_02765: MIT1002_02765 - tRNA-Pro, at 3,069,572 to 3,069,648 _02765 MIT1002_02766: MIT1002_02766 - tRNA-Leu, at 3,069,691 to 3,069,775 _02766 MIT1002_02767: MIT1002_02767 - tRNA-His, at 3,069,783 to 3,069,858 _02767 MIT1002_02768: MIT1002_02768 - tRNA-Arg, at 3,069,947 to 3,070,023 _02768 MIT1002_02769: MIT1002_02769 - tRNA-Pro, at 3,070,048 to 3,070,124 _02769 MIT1002_02770: MIT1002_02770 - hypothetical protein, at 3,070,471 to 3,071,325 _02770 MIT1002_02771: MIT1002_02771 - hypothetical protein, at 3,071,431 to 3,072,009 _02771 MIT1002_02772: MIT1002_02772 - putative tRNA (adenine(37)-N6)-methyltransferase, at 3,072,248 to 3,072,967 _02772 Position (kb) 3070 3071 3072Strain fitness (log2 ratio) -2 -1 0 1at 3069.662 kb on + strandat 3070.295 kb on - strandat 3070.332 kb on - strandat 3070.390 kb on + strandat 3070.398 kb on - strandat 3070.432 kb on + strandat 3071.379 kb on + strandat 3071.397 kb on + strandat 3071.412 kb on + strandat 3071.415 kb on - strandat 3071.449 kb on + strandat 3071.480 kb on + strandat 3071.491 kb on + strand, within MIT1002_02771at 3071.491 kb on + strand, within MIT1002_02771at 3071.538 kb on + strand, within MIT1002_02771at 3071.671 kb on + strand, within MIT1002_02771at 3071.728 kb on + strand, within MIT1002_02771at 3071.746 kb on - strand, within MIT1002_02771at 3071.823 kb on - strand, within MIT1002_02771at 3071.946 kb on - strand, within MIT1002_02771at 3071.971 kb on + strandat 3071.980 kb on - strandat 3072.038 kb on + strandat 3072.046 kb on - strandat 3072.085 kb on + strandat 3072.085 kb on + strandat 3072.093 kb on - strandat 3072.093 kb on - strandat 3072.093 kb on - strandat 3072.094 kb on - strandat 3072.103 kb on + strandat 3072.111 kb on - strandat 3072.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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3,069,662 + +0.4
3,070,295 - -0.4
3,070,332 - -1.2
3,070,390 + -1.8
3,070,398 - -1.5
3,070,432 + -1.6
3,071,379 + +0.1
3,071,397 + -0.8
3,071,412 + -0.2
3,071,415 - +0.0
3,071,449 + +1.6
3,071,480 + +0.9
3,071,491 + MIT1002_02771 0.10 +0.6
3,071,491 + MIT1002_02771 0.10 +0.2
3,071,538 + MIT1002_02771 0.18 +0.2
3,071,671 + MIT1002_02771 0.41 -0.2
3,071,728 + MIT1002_02771 0.51 +0.2
3,071,746 - MIT1002_02771 0.54 +0.2
3,071,823 - MIT1002_02771 0.68 +0.6
3,071,946 - MIT1002_02771 0.89 +0.6
3,071,971 + -1.6
3,071,980 - -1.0
3,072,038 + +0.2
3,072,046 - -0.3
3,072,085 + +1.5
3,072,085 + -0.3
3,072,093 - -1.7
3,072,093 - +0.2
3,072,093 - +0.2
3,072,094 - +1.7
3,072,103 + +0.1
3,072,111 - -0.3
3,072,291 + +0.8

Or see this region's nucleotide sequence