Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02563

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
2,860,215	+				+0.8
2,860,241	+				-0.3
2,860,244	-				-0.4
2,860,407	+				-0.0
2,860,407	+				+1.2
2,860,415	-				-0.4
2,860,427	-				+0.2
2,860,450	-		MIT1002_02562	0.11	+1.6
2,860,655	+		MIT1002_02562	0.39	+0.3
2,860,711	+		MIT1002_02562	0.47	+1.0
2,860,719	-		MIT1002_02562	0.48	-1.6
2,860,783	-		MIT1002_02562	0.57	+0.1
2,860,783	-		MIT1002_02562	0.57	+0.3
2,860,868	+		MIT1002_02562	0.69	+1.5
2,860,923	-		MIT1002_02562	0.77	-1.4
2,860,985	+		MIT1002_02562	0.86	-0.3
2,860,985	+		MIT1002_02562	0.86	-0.5
2,860,991	-		MIT1002_02562	0.87	+1.7
2,860,993	-		MIT1002_02562	0.87	-2.3
2,861,044	+				-0.7
2,861,052	-				+0.4
2,861,061	+				-0.9
2,861,087	-				-0.1
2,861,095	-				+1.4
2,861,113	+				+1.4
2,861,113	+				-1.6
2,861,113	+				+0.2
2,861,121	-				+0.8
2,861,155	-				+0.8
2,861,157	+				-0.2
2,861,165	-				+2.0
2,861,165	-				-1.5
2,861,185	+				+0.1
2,861,192	-				-0.7
2,861,200	-		MIT1002_02563	0.11	+0.2
2,861,239	+		MIT1002_02563	0.20	-1.6
2,861,274	+		MIT1002_02563	0.28	-1.3
2,861,282	-		MIT1002_02563	0.29	-2.3
2,861,287	-		MIT1002_02563	0.30	-0.5
2,861,297	-		MIT1002_02563	0.33	+1.0
2,861,374	+		MIT1002_02563	0.50	-0.4
2,861,376	+		MIT1002_02563	0.50	-0.7
2,861,385	+		MIT1002_02563	0.52	+0.9
2,861,415	+		MIT1002_02563	0.59	-1.5
2,861,423	-		MIT1002_02563	0.61	-1.5
2,861,517	+		MIT1002_02563	0.82	-0.4
2,861,520	-		MIT1002_02563	0.82	+0.2
2,861,532	-		MIT1002_02563	0.85	+0.7
2,861,630	+				-0.8
2,861,636	-				+0.2
2,861,672	+				-1.0
2,861,672	+				+1.3
2,861,712	-				-1.5
2,861,714	+				+1.5
2,861,714	+				+1.0
2,861,769	-		MIT1002_02564	0.14	-2.1
2,861,837	-		MIT1002_02564	0.19	+1.0
2,861,885	+		MIT1002_02564	0.23	-2.5
2,861,929	+		MIT1002_02564	0.27	+0.1
2,862,023	+		MIT1002_02564	0.35	-0.0
2,862,026	-		MIT1002_02564	0.35	-0.4
2,862,031	-		MIT1002_02564	0.35	+1.3
2,862,032	-		MIT1002_02564	0.35	-1.0
2,862,152	-		MIT1002_02564	0.45	-0.3
2,862,238	+		MIT1002_02564	0.52	-0.0
2,862,248	-		MIT1002_02564	0.53	+0.0
2,862,264	+		MIT1002_02564	0.54	-0.7
2,862,272	-		MIT1002_02564	0.55	-2.2
2,862,272	-		MIT1002_02564	0.55	-0.4
2,862,384	+		MIT1002_02564	0.64	-0.2
2,862,413	-		MIT1002_02564	0.66	-1.6
2,862,440	-		MIT1002_02564	0.68	-1.7
2,862,457	+		MIT1002_02564	0.70	-0.8
2,862,465	-		MIT1002_02564	0.70	-0.8
2,862,465	-		MIT1002_02564	0.70	+1.6
2,862,493	-		MIT1002_02564	0.73	+1.1