Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02125

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
2,386,341	+		MIT1002_02124	0.64	-1.0
2,386,348	+		MIT1002_02124	0.65	-0.9
2,386,355	-		MIT1002_02124	0.65	+1.5
2,386,356	-		MIT1002_02124	0.65	+0.5
2,386,362	+		MIT1002_02124	0.66	+0.6
2,386,362	+		MIT1002_02124	0.66	-0.8
2,386,362	+		MIT1002_02124	0.66	-0.2
2,386,362	+		MIT1002_02124	0.66	+0.7
2,386,365	-		MIT1002_02124	0.66	+0.4
2,386,397	+		MIT1002_02124	0.68	+1.3
2,386,397	+		MIT1002_02124	0.68	+0.6
2,386,397	+		MIT1002_02124	0.68	-2.3
2,386,397	+		MIT1002_02124	0.68	-1.7
2,386,405	-		MIT1002_02124	0.68	-0.2
2,386,493	+		MIT1002_02124	0.74	+0.2
2,386,496	+		MIT1002_02124	0.74	+0.9
2,386,555	-		MIT1002_02124	0.77	-1.0
2,386,598	+		MIT1002_02124	0.80	+1.2
2,386,705	-		MIT1002_02124	0.87	+0.4
2,386,707	-		MIT1002_02124	0.87	+0.5
2,386,716	+		MIT1002_02124	0.87	+0.0
2,386,717	-		MIT1002_02124	0.87	+0.6
2,386,722	+		MIT1002_02124	0.88	+2.0
2,386,724	-		MIT1002_02124	0.88	+0.4
2,386,731	-		MIT1002_02124	0.88	+0.7
2,386,733	+		MIT1002_02124	0.88	+0.5
2,386,745	-		MIT1002_02124	0.89	+0.8
2,386,893	+				-0.7
2,386,894	+				-0.3
2,386,902	-				-0.1
2,386,902	-				+1.9
2,386,921	+				+1.4
2,386,971	+				+0.1
2,387,194	+				+0.3
2,387,218	-				-1.3
2,387,223	-				-2.8
2,387,330	-				-4.5
2,387,342	+				-1.7
2,387,423	+		MIT1002_02125	0.10	-2.2
2,387,431	-		MIT1002_02125	0.11	-0.8
2,387,431	-		MIT1002_02125	0.11	-2.8
2,387,441	-		MIT1002_02125	0.11	-2.1
2,387,515	-		MIT1002_02125	0.16	-2.6
2,387,533	-		MIT1002_02125	0.17	-1.0
2,387,633	-		MIT1002_02125	0.24	-2.3
2,387,760	+		MIT1002_02125	0.32	-2.2
2,387,776	-		MIT1002_02125	0.33	+0.0
2,387,804	-		MIT1002_02125	0.34	-2.6
2,387,853	+		MIT1002_02125	0.38	-4.8
2,387,853	+		MIT1002_02125	0.38	+1.2
2,387,905	-		MIT1002_02125	0.41	-2.1
2,387,913	+		MIT1002_02125	0.41	-1.6
2,387,913	+		MIT1002_02125	0.41	-2.2
2,387,932	+		MIT1002_02125	0.43	-0.4
2,387,946	+		MIT1002_02125	0.43	-1.0
2,387,970	-		MIT1002_02125	0.45	-2.4
2,388,023	+		MIT1002_02125	0.48	-2.3
2,388,043	-		MIT1002_02125	0.50	-2.1
2,388,065	+		MIT1002_02125	0.51	-2.3
2,388,073	+		MIT1002_02125	0.52	-0.8
2,388,081	-		MIT1002_02125	0.52	-2.9
2,388,082	+		MIT1002_02125	0.52	-3.8
2,388,171	-		MIT1002_02125	0.58	-1.3
2,388,171	-		MIT1002_02125	0.58	-2.6
2,388,252	+		MIT1002_02125	0.63	-2.2
2,388,252	+		MIT1002_02125	0.63	-1.7
2,388,252	+		MIT1002_02125	0.63	-2.5
2,388,260	-		MIT1002_02125	0.63	-2.2
2,388,271	+		MIT1002_02125	0.64	-1.5
2,388,331	+		MIT1002_02125	0.68	-2.1
2,388,341	+		MIT1002_02125	0.69	-2.1
2,388,403	+		MIT1002_02125	0.73	-1.6
2,388,411	-		MIT1002_02125	0.73	-4.0
2,388,438	+		MIT1002_02125	0.75	+0.4
2,388,465	-		MIT1002_02125	0.76	-3.4
2,388,485	+		MIT1002_02125	0.78	-3.0
2,388,531	-		MIT1002_02125	0.81	-0.2
2,388,568	+		MIT1002_02125	0.83	-0.6
2,388,635	+		MIT1002_02125	0.87	-0.6
2,388,635	+		MIT1002_02125	0.87	-2.3
2,388,643	-		MIT1002_02125	0.88	-3.5
2,388,677	-				-2.2
2,388,705	-				-1.5
2,388,727	+				+0.0
2,388,779	+				+1.2
2,388,784	+				-1.3
2,388,826	+				+1.2
2,388,959	+				-1.6
2,388,959	+				-0.9
2,388,959	+				-0.7
2,388,959	+				-2.0
2,388,967	-				+0.7
2,388,967	-				-0.3
2,388,967	-				-0.2
2,388,967	-				+0.6
2,388,967	-				-1.6
2,388,969	+				-0.7
2,388,976	+				-1.6
2,388,984	-				-0.0
2,389,008	+				+0.2
2,389,043	-		MIT1002_02126	0.16	-1.0
2,389,121	+		MIT1002_02126	0.32	-0.5
2,389,138	+		MIT1002_02126	0.35	-1.3
2,389,204	-		MIT1002_02126	0.49	-0.1
2,389,486	+				-0.1
2,389,696	-		MIT1002_02127	0.54	-2.0
2,389,811	+		MIT1002_02127	0.78	-2.6