Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02068

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
2,327,285	-		MIT1002_02065	0.60	+0.4
2,327,361	+		MIT1002_02065	0.69	+0.5
2,327,526	-		MIT1002_02065	0.88	-0.9
2,327,656	+				-0.4
2,327,770	+		MIT1002_02066	0.32	-0.7
2,327,778	-		MIT1002_02066	0.35	+0.2
2,327,906	-		MIT1002_02066	0.73	-1.3
2,327,932	-		MIT1002_02066	0.80	-0.6
2,327,958	+		MIT1002_02066	0.88	+2.3
2,327,962	+		MIT1002_02066	0.89	+1.2
2,327,973	+				-0.0
2,327,981	-				-0.4
2,327,982	+				+0.4
2,327,982	+				-0.8
2,327,990	-				+1.2
2,328,094	+		MIT1002_02067	0.41	-0.6
2,328,105	-		MIT1002_02067	0.45	-0.2
2,328,128	+		MIT1002_02067	0.54	-0.2
2,328,128	+		MIT1002_02067	0.54	+0.5
2,328,128	+		MIT1002_02067	0.54	+0.2
2,328,128	+		MIT1002_02067	0.54	+0.1
2,328,136	-		MIT1002_02067	0.57	-0.0
2,328,136	-		MIT1002_02067	0.57	+0.0
2,328,136	-		MIT1002_02067	0.57	+1.3
2,328,136	-		MIT1002_02067	0.57	+0.3
2,328,138	-		MIT1002_02067	0.58	+0.3
2,328,176	+		MIT1002_02067	0.72	+0.4
2,328,268	+				+0.4
2,328,268	+				+0.3
2,328,287	+				+0.4
2,328,295	-				-1.1
2,328,336	+				+0.5
2,328,337	-				+1.3
2,328,360	+				-1.5
2,328,376	+				+0.0
2,328,379	-				+0.1
2,328,384	-				+0.4
2,328,384	-				+1.7
2,328,403	+		MIT1002_02068	0.10	-1.6
2,328,403	+		MIT1002_02068	0.10	+0.4
2,328,411	-		MIT1002_02068	0.11	+0.4
2,328,421	+		MIT1002_02068	0.11	-0.3
2,328,650	+		MIT1002_02068	0.26	-0.2
2,328,668	-		MIT1002_02068	0.27	-1.6
2,328,727	+		MIT1002_02068	0.31	-1.6
2,328,785	+		MIT1002_02068	0.35	-0.1
2,328,791	-		MIT1002_02068	0.35	-0.6
2,328,793	-		MIT1002_02068	0.36	+0.1
2,328,811	+		MIT1002_02068	0.37	-1.6
2,328,812	-		MIT1002_02068	0.37	+0.7
2,328,846	-		MIT1002_02068	0.39	+0.9
2,328,951	-		MIT1002_02068	0.46	-0.2
2,328,963	+		MIT1002_02068	0.47	+0.9
2,329,005	-		MIT1002_02068	0.49	+0.4
2,329,022	+		MIT1002_02068	0.50	-0.2
2,329,024	+		MIT1002_02068	0.51	+0.6
2,329,030	-		MIT1002_02068	0.51	-0.5
2,329,067	+		MIT1002_02068	0.53	-1.7
2,329,126	+		MIT1002_02068	0.57	-1.0
2,329,153	-		MIT1002_02068	0.59	-1.4
2,329,214	+		MIT1002_02068	0.63	-1.0
2,329,221	-		MIT1002_02068	0.63	-0.3
2,329,250	+		MIT1002_02068	0.65	+0.4
2,329,250	+		MIT1002_02068	0.65	-0.3
2,329,268	-		MIT1002_02068	0.66	+2.5
2,329,301	+		MIT1002_02068	0.69	-0.4
2,329,309	-		MIT1002_02068	0.69	-0.6
2,329,313	-		MIT1002_02068	0.69	-1.1
2,329,346	+		MIT1002_02068	0.71	-0.8
2,329,480	+		MIT1002_02068	0.80	+0.1
2,329,488	-		MIT1002_02068	0.81	-0.4
2,329,488	-		MIT1002_02068	0.81	-0.4
2,329,525	+		MIT1002_02068	0.83	-0.4
2,329,586	+		MIT1002_02068	0.87	+0.0
2,329,604	+		MIT1002_02068	0.88	+1.3
2,329,626	-		MIT1002_02068	0.90	+1.1
2,329,745	+				-0.3
2,329,856	-				-1.4
2,330,060	+		MIT1002_02069	0.20	+0.4
2,330,100	+		MIT1002_02069	0.24	+1.3
2,330,120	-		MIT1002_02069	0.26	-0.3
2,330,159	+		MIT1002_02069	0.29	+1.5
2,330,170	+		MIT1002_02069	0.30	+0.3
2,330,194	+		MIT1002_02069	0.32	-0.2
2,330,199	+		MIT1002_02069	0.33	+0.0
2,330,267	+		MIT1002_02069	0.39	+0.5
2,330,275	-		MIT1002_02069	0.40	+0.1
2,330,346	+		MIT1002_02069	0.46	-1.2
2,330,549	-		MIT1002_02069	0.64	-1.6
2,330,551	+		MIT1002_02069	0.64	+0.9
2,330,558	+		MIT1002_02069	0.65	-0.5
2,330,563	+		MIT1002_02069	0.65	+0.3
2,330,571	-		MIT1002_02069	0.66	+0.8
2,330,571	-		MIT1002_02069	0.66	+0.2
2,330,579	+		MIT1002_02069	0.67	+2.8
2,330,579	+		MIT1002_02069	0.67	-0.1
2,330,579	+		MIT1002_02069	0.67	-1.0
2,330,579	+		MIT1002_02069	0.67	+0.6
2,330,587	-		MIT1002_02069	0.67	-1.7
2,330,587	-		MIT1002_02069	0.67	-1.6
2,330,587	-		MIT1002_02069	0.67	+0.9
2,330,587	-		MIT1002_02069	0.67	-0.4
2,330,587	-		MIT1002_02069	0.67	-1.7
2,330,595	-		MIT1002_02069	0.68	+0.0
2,330,654	-		MIT1002_02069	0.73	+0.8
2,330,697	+		MIT1002_02069	0.77	+0.9
2,330,700	-		MIT1002_02069	0.78	-1.3