Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01954

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
2,173,193	+		MIT1002_01953	0.56	+0.8
2,173,201	-		MIT1002_01953	0.56	+1.9
2,173,208	+		MIT1002_01953	0.57	+1.6
2,173,216	+		MIT1002_01953	0.57	-1.1
2,173,229	+		MIT1002_01953	0.58	+2.3
2,173,236	+		MIT1002_01953	0.59	+0.4
2,173,271	-		MIT1002_01953	0.61	-0.0
2,173,273	+		MIT1002_01953	0.61	-0.1
2,173,273	+		MIT1002_01953	0.61	-0.2
2,173,273	+		MIT1002_01953	0.61	-0.1
2,173,298	+		MIT1002_01953	0.63	+1.3
2,173,315	-		MIT1002_01953	0.64	-0.6
2,173,328	+		MIT1002_01953	0.65	+0.7
2,173,399	-		MIT1002_01953	0.69	+0.1
2,173,419	-		MIT1002_01953	0.71	-0.8
2,173,446	-		MIT1002_01953	0.73	-0.1
2,173,517	+		MIT1002_01953	0.77	-0.1
2,173,525	-		MIT1002_01953	0.78	-0.3
2,173,679	+		MIT1002_01953	0.88	-0.0
2,173,707	+		MIT1002_01953	0.90	-0.5
2,173,727	-				-0.6
2,173,735	-				+0.6
2,173,815	-				+0.1
2,173,856	+				-0.0
2,174,037	+				-0.2
2,174,122	-				+0.6
2,174,168	-				+0.1
2,174,231	+				+0.5
2,174,285	+				+0.7
2,174,294	-				+2.3
2,174,303	-				+1.0
2,174,388	+				+0.4
2,174,578	+		MIT1002_01954	0.14	-0.4
2,174,590	+		MIT1002_01954	0.14	+2.0
2,174,644	+		MIT1002_01954	0.16	+0.5
2,174,652	-		MIT1002_01954	0.16	-0.4
2,174,727	-		MIT1002_01954	0.19	+1.2
2,174,834	-		MIT1002_01954	0.22	-1.2
2,174,917	+		MIT1002_01954	0.25	+1.2
2,174,945	-		MIT1002_01954	0.26	-2.1
2,174,989	+		MIT1002_01954	0.27	+1.1
2,175,062	-		MIT1002_01954	0.30	+1.8
2,175,062	-		MIT1002_01954	0.30	+0.3
2,175,146	+		MIT1002_01954	0.33	-1.1
2,175,146	+		MIT1002_01954	0.33	+0.7
2,175,220	-		MIT1002_01954	0.35	+1.6
2,175,221	-		MIT1002_01954	0.35	-1.2
2,175,414	-		MIT1002_01954	0.41	+2.3
2,175,462	-		MIT1002_01954	0.43	-0.4
2,175,462	-		MIT1002_01954	0.43	+0.4
2,175,497	+		MIT1002_01954	0.44	-0.4
2,175,497	+		MIT1002_01954	0.44	+0.5
2,175,497	+		MIT1002_01954	0.44	-1.7
2,175,497	+		MIT1002_01954	0.44	+1.0
2,175,497	+		MIT1002_01954	0.44	-0.1
2,175,497	+		MIT1002_01954	0.44	+0.1
2,175,497	+		MIT1002_01954	0.44	+1.0
2,175,505	-		MIT1002_01954	0.44	-0.3
2,175,505	-		MIT1002_01954	0.44	+0.7
2,175,505	-		MIT1002_01954	0.44	+0.4
2,175,604	-		MIT1002_01954	0.48	+1.3
2,175,665	+		MIT1002_01954	0.50	+0.5
2,175,791	+		MIT1002_01954	0.54	+1.2
2,175,791	+		MIT1002_01954	0.54	+1.0
2,175,791	+		MIT1002_01954	0.54	-0.1
2,175,791	+		MIT1002_01954	0.54	-0.5
2,175,791	+		MIT1002_01954	0.54	+0.1
2,175,791	+		MIT1002_01954	0.54	-0.0
2,175,791	+		MIT1002_01954	0.54	+0.1
2,175,791	+		MIT1002_01954	0.54	-1.1
2,175,791	+		MIT1002_01954	0.54	+1.3
2,175,791	+		MIT1002_01954	0.54	-0.6
2,175,791	+		MIT1002_01954	0.54	-1.6
2,175,791	+		MIT1002_01954	0.54	-0.5
2,175,791	+		MIT1002_01954	0.54	-0.2
2,175,791	+		MIT1002_01954	0.54	+1.2
2,175,791	+		MIT1002_01954	0.54	-0.0
2,175,799	-		MIT1002_01954	0.54	+1.4
2,175,799	-		MIT1002_01954	0.54	-0.3
2,175,799	-		MIT1002_01954	0.54	+1.0
2,175,799	-		MIT1002_01954	0.54	+0.6
2,175,799	-		MIT1002_01954	0.54	-0.9
2,175,799	-		MIT1002_01954	0.54	-1.5
2,175,799	-		MIT1002_01954	0.54	+1.5
2,175,799	-		MIT1002_01954	0.54	-1.0
2,175,799	-		MIT1002_01954	0.54	+0.2
2,175,799	-		MIT1002_01954	0.54	-0.8
2,175,799	-		MIT1002_01954	0.54	+0.5
2,175,799	-		MIT1002_01954	0.54	-0.4
2,175,799	-		MIT1002_01954	0.54	+2.3
2,175,826	+		MIT1002_01954	0.55	+0.4
2,175,832	+		MIT1002_01954	0.55	+0.4
2,175,833	+		MIT1002_01954	0.55	+1.9
2,175,834	-		MIT1002_01954	0.55	-0.2
2,175,842	+		MIT1002_01954	0.55	+0.1
2,175,842	+		MIT1002_01954	0.55	-0.6
2,175,849	+		MIT1002_01954	0.56	-0.3
2,175,882	+		MIT1002_01954	0.57	-0.3
2,175,914	-		MIT1002_01954	0.58	+1.1
2,175,970	+		MIT1002_01954	0.60	-1.7
2,175,998	-		MIT1002_01954	0.60	-1.1
2,176,008	+		MIT1002_01954	0.61	+0.1
2,176,049	+		MIT1002_01954	0.62	+0.1
2,176,081	+		MIT1002_01954	0.63	+1.9
2,176,081	+		MIT1002_01954	0.63	-0.2
2,176,100	+		MIT1002_01954	0.64	+0.5
2,176,108	-		MIT1002_01954	0.64	-0.5
2,176,114	+		MIT1002_01954	0.64	+2.0
2,176,114	+		MIT1002_01954	0.64	-0.3
2,176,114	+		MIT1002_01954	0.64	-0.5
2,176,114	+		MIT1002_01954	0.64	+1.6
2,176,122	-		MIT1002_01954	0.65	-0.0
2,176,122	-		MIT1002_01954	0.65	+0.5
2,176,151	+		MIT1002_01954	0.65	+0.1
2,176,274	+		MIT1002_01954	0.70	+1.7
2,176,375	+		MIT1002_01954	0.73	-1.0
2,176,383	-		MIT1002_01954	0.73	+0.3
2,176,383	-		MIT1002_01954	0.73	+1.2
2,176,393	+		MIT1002_01954	0.73	-0.2
2,176,402	-		MIT1002_01954	0.74	+1.0
2,176,450	-		MIT1002_01954	0.75	+1.4
2,176,527	-		MIT1002_01954	0.78	-0.0
2,176,548	-		MIT1002_01954	0.78	-0.5
2,176,703	+		MIT1002_01954	0.84	+0.2
2,176,713	-		MIT1002_01954	0.84	+0.5
2,176,715	+		MIT1002_01954	0.84	+2.6
2,176,715	+		MIT1002_01954	0.84	+0.3
2,176,715	+		MIT1002_01954	0.84	-1.2
2,176,715	+		MIT1002_01954	0.84	-0.6
2,176,715	+		MIT1002_01954	0.84	-1.1
2,176,715	+		MIT1002_01954	0.84	-2.1
2,176,715	+		MIT1002_01954	0.84	+0.7
2,176,723	-		MIT1002_01954	0.84	+0.9
2,176,723	-		MIT1002_01954	0.84	-0.2
2,176,723	-		MIT1002_01954	0.84	+0.6
2,176,723	-		MIT1002_01954	0.84	+0.7
2,176,723	-		MIT1002_01954	0.84	+1.4
2,176,723	-		MIT1002_01954	0.84	+0.4
2,176,771	+		MIT1002_01954	0.86	-1.1
2,176,794	-		MIT1002_01954	0.87	+1.3
2,176,862	-		MIT1002_01954	0.89	-1.2
2,176,867	+		MIT1002_01954	0.89	-1.5
2,176,875	-		MIT1002_01954	0.89	-0.3
2,176,875	-		MIT1002_01954	0.89	-1.0
2,177,143	+				-0.2
2,177,143	+				+0.5
2,177,153	+				+0.8
2,177,161	-				-1.2
2,177,336	+				+0.9
2,177,373	-				-0.7
2,177,373	-				-0.2
2,177,397	-				-0.7
2,177,415	+				+1.0
2,177,463	-				+2.6
2,177,513	-				-0.5
2,177,536	+				-0.2
2,177,536	+				-1.6
2,177,539	-				+0.3
2,177,751	+		MIT1002_01955	0.11	+0.4
2,177,762	+		MIT1002_01955	0.11	-1.0
2,177,835	+		MIT1002_01955	0.13	+0.8
2,177,859	-		MIT1002_01955	0.13	-0.9
2,177,944	-		MIT1002_01955	0.15	-1.2
2,177,983	-		MIT1002_01955	0.16	+0.5
2,177,992	+		MIT1002_01955	0.16	-1.0
2,178,046	-		MIT1002_01955	0.18	-0.3
2,178,046	-		MIT1002_01955	0.18	-0.6
2,178,052	+		MIT1002_01955	0.18	+0.9
2,178,052	+		MIT1002_01955	0.18	+1.8
2,178,052	+		MIT1002_01955	0.18	+1.0
2,178,052	+		MIT1002_01955	0.18	-1.7
2,178,052	+		MIT1002_01955	0.18	-0.7
2,178,060	-		MIT1002_01955	0.18	-0.3
2,178,060	-		MIT1002_01955	0.18	-0.3
2,178,060	-		MIT1002_01955	0.18	-2.0
2,178,073	-		MIT1002_01955	0.18	+1.1
2,178,097	+		MIT1002_01955	0.19	+0.4
2,178,099	-		MIT1002_01955	0.19	+1.9
2,178,107	+		MIT1002_01955	0.19	+1.3
2,178,107	+		MIT1002_01955	0.19	+1.3
2,178,115	-		MIT1002_01955	0.19	+0.5
2,178,115	-		MIT1002_01955	0.19	-0.6
2,178,115	-		MIT1002_01955	0.19	+1.3
2,178,115	-		MIT1002_01955	0.19	-0.5
2,178,115	-		MIT1002_01955	0.19	-0.1
2,178,165	-		MIT1002_01955	0.20	+0.6
2,178,184	+		MIT1002_01955	0.21	+2.6
2,178,192	+		MIT1002_01955	0.21	+0.4