Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01901

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
2,113,271	+		MIT1002_01900	0.18	+0.3
2,113,293	-		MIT1002_01900	0.20	-0.5
2,113,397	-		MIT1002_01900	0.30	+1.5
2,113,397	-		MIT1002_01900	0.30	-0.7
2,113,397	-		MIT1002_01900	0.30	-1.7
2,113,492	+		MIT1002_01900	0.40	+0.3
2,113,526	+		MIT1002_01900	0.43	-0.4
2,113,675	-		MIT1002_01900	0.57	-0.5
2,113,786	-		MIT1002_01900	0.68	-0.0
2,113,857	-		MIT1002_01900	0.75	-0.7
2,113,874	+		MIT1002_01900	0.77	+0.7
2,113,893	+		MIT1002_01900	0.79	-0.6
2,113,901	-		MIT1002_01900	0.80	-0.1
2,114,029	-				-0.1
2,114,061	+				-0.6
2,114,204	-				-3.7
2,114,204	-				+0.5
2,114,206	+				-0.0
2,114,206	+				+0.0
2,114,206	+				-1.9
2,114,206	+				+0.0
2,114,206	+				-0.9
2,114,206	+				-2.6
2,114,206	+				+0.1
2,114,212	-				-0.0
2,114,214	-				+1.7
2,114,216	+				-0.7
2,114,253	+				+1.8
2,114,269	-				-0.3
2,114,304	-				+1.0
2,114,327	+		MIT1002_01901	0.12	-1.1
2,114,339	+		MIT1002_01901	0.14	-1.6
2,114,345	+		MIT1002_01901	0.15	-0.2
2,114,384	+		MIT1002_01901	0.23	-1.6
2,114,396	+		MIT1002_01901	0.25	+0.1
2,114,431	+		MIT1002_01901	0.33	+1.3
2,114,431	+		MIT1002_01901	0.33	-0.4
2,114,478	+		MIT1002_01901	0.42	-0.9
2,114,569	+		MIT1002_01901	0.60	-0.9
2,114,569	+		MIT1002_01901	0.60	+0.1
2,114,576	+		MIT1002_01901	0.62	+2.6
2,114,577	-		MIT1002_01901	0.62	+1.3
2,114,615	+		MIT1002_01901	0.70	+0.1
2,114,837	+				-0.3
2,114,845	-				-0.0
2,114,845	-				-0.4
2,114,869	+		MIT1002_01902	0.13	+0.3
2,114,924	+		MIT1002_01902	0.25	+0.6
2,114,954	-		MIT1002_01902	0.31	-1.0
2,115,019	-		MIT1002_01902	0.45	-0.6
2,115,048	+		MIT1002_01902	0.51	+1.6
2,115,054	-		MIT1002_01902	0.53	-1.0
2,115,058	+		MIT1002_01902	0.54	+2.3
2,115,058	+		MIT1002_01902	0.54	-1.0
2,115,066	-		MIT1002_01902	0.55	+0.0
2,115,089	+		MIT1002_01902	0.60	-1.7
2,115,096	+		MIT1002_01902	0.62	+0.9
2,115,096	+		MIT1002_01902	0.62	+1.7
2,115,096	+		MIT1002_01902	0.62	-0.4
2,115,097	-		MIT1002_01902	0.62	-1.8
2,115,104	-		MIT1002_01902	0.63	+0.9
2,115,104	-		MIT1002_01902	0.63	+0.4
2,115,104	-		MIT1002_01902	0.63	-2.0
2,115,175	-		MIT1002_01902	0.79	-0.8
2,115,194	+		MIT1002_01902	0.83	-0.5
2,115,202	-		MIT1002_01902	0.84	-0.2
2,115,204	+		MIT1002_01902	0.85	+1.2
2,115,204	+		MIT1002_01902	0.85	-0.1
2,115,238	+				-0.1
2,115,413	+				+0.9
2,115,479	-				-0.9
2,115,493	+				+1.7
2,115,661	-		MIT1002_01903	0.27	+0.3
2,115,710	+		MIT1002_01903	0.38	+1.2
2,115,712	-		MIT1002_01903	0.38	+0.2
2,115,715	+		MIT1002_01903	0.39	-0.9
2,115,716	+		MIT1002_01903	0.39	+0.5