Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01747

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,939,975	+		MIT1002_01745	0.62	+2.1
1,940,010	+		MIT1002_01745	0.71	-0.0
1,940,020	+		MIT1002_01745	0.74	+1.2
1,940,065	-		MIT1002_01745	0.86	+0.0
1,940,071	+		MIT1002_01745	0.87	-1.1
1,940,101	+				-0.2
1,940,109	-				-1.0
1,940,158	+				-0.4
1,940,161	-				-1.2
1,940,161	-				-0.8
1,940,166	-				+0.3
1,940,185	-		MIT1002_01746	0.15	+1.5
1,940,255	+		MIT1002_01746	0.34	-0.6
1,940,290	-		MIT1002_01746	0.43	+1.4
1,940,300	-		MIT1002_01746	0.46	-0.4
1,940,331	+		MIT1002_01746	0.55	-0.0
1,940,339	-		MIT1002_01746	0.57	+0.7
1,940,339	-		MIT1002_01746	0.57	-0.4
1,940,385	-		MIT1002_01746	0.69	-0.2
1,940,450	-		MIT1002_01746	0.87	+0.1
1,940,460	+				-1.1
1,940,590	-				-2.0
1,940,636	+				-0.9
1,940,655	+				+0.4
1,940,676	+				-2.8
1,940,813	-				+1.1
1,940,813	-				-0.8
1,940,818	-				+1.6
1,940,820	+				+0.4
1,940,823	-				+2.2
1,940,855	+				+0.4
1,940,926	-				+1.6
1,941,014	+		MIT1002_01747	0.22	+2.2
1,941,035	+		MIT1002_01747	0.30	+1.1
1,941,040	+		MIT1002_01747	0.32	+0.4
1,941,040	+		MIT1002_01747	0.32	-0.5
1,941,043	-		MIT1002_01747	0.33	-0.2
1,941,055	-		MIT1002_01747	0.37	+0.3
1,941,057	+		MIT1002_01747	0.38	-0.1
1,941,075	+		MIT1002_01747	0.45	-0.9
1,941,075	+		MIT1002_01747	0.45	-0.4
1,941,083	-		MIT1002_01747	0.47	+0.1
1,941,083	-		MIT1002_01747	0.47	+2.4
1,941,154	+		MIT1002_01747	0.73	-0.7
1,941,162	-		MIT1002_01747	0.76	-1.4
1,941,186	-		MIT1002_01747	0.85	-0.7
1,941,480	-				+0.1
1,941,480	-				+2.0
1,941,482	-				-0.5
1,941,520	+				-1.3
1,941,551	+		MIT1002_01748	0.14	-0.1
1,941,595	+		MIT1002_01748	0.19	-0.4
1,941,595	+		MIT1002_01748	0.19	+0.4
1,941,595	+		MIT1002_01748	0.19	+2.0
1,941,603	-		MIT1002_01748	0.21	-0.9
1,941,613	-		MIT1002_01748	0.22	-0.2
1,941,680	+		MIT1002_01748	0.31	+0.4
1,941,691	-		MIT1002_01748	0.32	+0.9
1,941,747	+		MIT1002_01748	0.39	+0.5
1,941,769	-		MIT1002_01748	0.42	+0.5
1,941,845	+		MIT1002_01748	0.52	+0.9
1,941,853	-		MIT1002_01748	0.53	+0.5
1,941,904	-		MIT1002_01748	0.60	-0.8
1,941,917	+		MIT1002_01748	0.62	-0.9
1,941,917	+		MIT1002_01748	0.62	-0.1
1,941,923	-		MIT1002_01748	0.62	-1.3
1,941,923	-		MIT1002_01748	0.62	+0.0
1,941,923	-		MIT1002_01748	0.62	-1.2
1,941,923	-		MIT1002_01748	0.62	-1.4
1,941,953	-		MIT1002_01748	0.66	-0.8
1,941,986	-		MIT1002_01748	0.71	+0.6
1,942,145	+				+0.7
1,942,220	-				+0.6