Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01724

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,914,389	+		MIT1002_01723	0.24	+0.4
1,914,431	+		MIT1002_01723	0.27	-2.0
1,914,439	-		MIT1002_01723	0.28	+0.1
1,914,472	-		MIT1002_01723	0.31	-1.3
1,914,537	+		MIT1002_01723	0.37	-1.7
1,914,537	+		MIT1002_01723	0.37	-1.8
1,914,537	+		MIT1002_01723	0.37	+0.5
1,914,539	+		MIT1002_01723	0.37	+1.3
1,914,545	-		MIT1002_01723	0.37	+0.3
1,914,609	+		MIT1002_01723	0.43	+1.8
1,914,609	+		MIT1002_01723	0.43	-1.6
1,914,617	-		MIT1002_01723	0.44	-0.1
1,914,731	+		MIT1002_01723	0.54	+0.3
1,914,741	+		MIT1002_01723	0.54	-0.7
1,914,749	-		MIT1002_01723	0.55	-0.0
1,914,754	-		MIT1002_01723	0.56	+0.7
1,914,754	-		MIT1002_01723	0.56	-1.6
1,914,756	+		MIT1002_01723	0.56	+10.8
1,914,814	+		MIT1002_01723	0.61	-1.0
1,914,848	+		MIT1002_01723	0.64	+0.2
1,914,848	+		MIT1002_01723	0.64	-1.2
1,914,849	-		MIT1002_01723	0.64	-0.6
1,914,856	-		MIT1002_01723	0.64	+0.6
1,914,875	+		MIT1002_01723	0.66	-1.6
1,914,876	-		MIT1002_01723	0.66	-0.9
1,914,944	+		MIT1002_01723	0.72	-0.1
1,914,960	+		MIT1002_01723	0.74	-0.5
1,914,974	-		MIT1002_01723	0.75	-1.1
1,914,974	-		MIT1002_01723	0.75	-2.6
1,915,020	+		MIT1002_01723	0.79	-2.7
1,915,020	+		MIT1002_01723	0.79	-0.9
1,915,089	+		MIT1002_01723	0.85	-0.0
1,915,089	+		MIT1002_01723	0.85	+0.8
1,915,133	+		MIT1002_01723	0.89	+0.3
1,915,141	-		MIT1002_01723	0.89	+2.1
1,915,141	-		MIT1002_01723	0.89	-2.4
1,915,174	-				-1.6
1,915,201	-				+0.3
1,915,201	-				-1.2
1,915,201	-				-0.1
1,915,201	-				-0.2
1,915,289	+				+0.3
1,915,490	+				-0.8
1,915,517	+				-1.5
1,915,558	+				-1.2
1,915,576	-				-0.7
1,915,677	-				-1.0
1,915,707	-		MIT1002_01724	0.10	-2.0
1,915,875	-		MIT1002_01724	0.15	-2.6
1,915,924	+		MIT1002_01724	0.16	-1.3
1,915,937	-		MIT1002_01724	0.17	-1.0
1,915,975	+		MIT1002_01724	0.18	-1.9
1,916,076	+		MIT1002_01724	0.21	-2.9
1,916,140	+		MIT1002_01724	0.23	-2.0
1,916,187	-		MIT1002_01724	0.24	-1.4
1,916,206	-		MIT1002_01724	0.25	-0.5
1,916,255	-		MIT1002_01724	0.26	+0.4
1,916,300	-		MIT1002_01724	0.28	-1.2
1,916,300	-		MIT1002_01724	0.28	-1.9
1,916,340	+		MIT1002_01724	0.29	-1.5
1,916,340	+		MIT1002_01724	0.29	+1.9
1,916,348	-		MIT1002_01724	0.29	-2.1
1,916,389	+		MIT1002_01724	0.30	-0.9
1,916,389	+		MIT1002_01724	0.30	+0.4
1,916,389	+		MIT1002_01724	0.30	+0.2
1,916,431	+		MIT1002_01724	0.31	+0.9
1,916,460	+		MIT1002_01724	0.32	+0.0
1,916,463	-		MIT1002_01724	0.32	-1.1
1,916,479	+		MIT1002_01724	0.33	-1.1
1,916,479	+		MIT1002_01724	0.33	-0.1
1,916,497	-		MIT1002_01724	0.33	+0.7
1,916,507	-		MIT1002_01724	0.34	-1.0
1,916,526	-		MIT1002_01724	0.34	+2.2
1,916,551	+		MIT1002_01724	0.35	+1.0
1,916,650	-		MIT1002_01724	0.38	-0.1
1,916,793	+		MIT1002_01724	0.42	-0.8
1,917,179	-		MIT1002_01724	0.54	-1.2
1,917,184	-		MIT1002_01724	0.54	-0.5
1,917,246	-		MIT1002_01724	0.56	-0.6
1,917,321	-		MIT1002_01724	0.58	+0.7
1,919,003	-				-0.2
1,919,139	-				+1.2
1,919,161	-				-1.4
1,919,185	-				-2.4
1,919,223	-				-0.2
1,919,300	-				-1.1
1,919,522	-				+0.4
1,919,565	+				-0.1
1,919,565	-				-0.3
1,919,582	-				+0.1
1,919,585	-				+1.7
1,919,585	-				-0.7
1,919,585	-				+0.7
1,919,628	+				+0.6
1,919,647	+				+0.2
1,919,679	+				-0.1
1,919,679	+				-1.5
1,919,679	+				+1.8
1,919,687	-		MIT1002_01725	0.10	-0.6
1,919,687	-		MIT1002_01725	0.10	+2.1
1,919,687	-		MIT1002_01725	0.10	+0.5
1,919,687	-		MIT1002_01725	0.10	+0.8
1,919,687	-		MIT1002_01725	0.10	-0.8
1,919,687	-		MIT1002_01725	0.10	+1.4
1,919,687	-		MIT1002_01725	0.10	-0.6
1,919,725	+		MIT1002_01725	0.14	+0.0
1,919,725	+		MIT1002_01725	0.14	+1.5
1,919,725	+		MIT1002_01725	0.14	+0.7
1,919,725	+		MIT1002_01725	0.14	+0.8
1,919,733	-		MIT1002_01725	0.15	+0.2
1,919,734	-		MIT1002_01725	0.15	-0.3