Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01719

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,908,093	-		MIT1002_01717	0.81	+1.7
1,908,168	+		MIT1002_01717	0.89	-1.3
1,908,168	+		MIT1002_01717	0.89	+1.0
1,908,176	-		MIT1002_01717	0.90	-0.3
1,908,176	-		MIT1002_01717	0.90	+0.5
1,908,176	-		MIT1002_01717	0.90	-1.0
1,908,176	-		MIT1002_01717	0.90	+1.4
1,908,196	+				+1.4
1,908,230	-				-0.8
1,908,264	+				+0.1
1,908,278	+				+1.0
1,908,278	+				+1.5
1,908,278	+				+0.5
1,908,278	+				-0.1
1,908,278	+				+0.4
1,908,286	-				-0.2
1,908,286	-				-0.3
1,908,286	-				-0.3
1,908,307	-				-0.0
1,908,336	+				-0.0
1,908,337	+				-0.6
1,908,344	-				+1.7
1,908,369	+				-0.8
1,908,454	+				+1.4
1,908,457	-				-0.4
1,908,467	-				+0.2
1,908,520	-				-1.5
1,908,580	+		MIT1002_01718	0.19	-0.4
1,908,757	+		MIT1002_01718	0.57	-1.6
1,908,772	+		MIT1002_01718	0.61	+0.7
1,908,780	-		MIT1002_01718	0.62	-2.2
1,908,889	+		MIT1002_01718	0.86	+0.6
1,908,896	+		MIT1002_01718	0.87	-0.6
1,908,941	+				-1.3
1,908,947	-				+1.2
1,908,949	+				-2.0
1,908,949	-				-0.2
1,908,954	+				-0.6
1,908,957	-				-0.7
1,908,962	-				+0.7
1,909,047	-				+0.6
1,909,051	+				-0.2
1,909,072	-				-0.2
1,909,080	-				+0.4
1,909,138	-				-0.2
1,909,171	+		MIT1002_01719	0.10	+0.5
1,909,172	-		MIT1002_01719	0.10	-1.6
1,909,243	-		MIT1002_01719	0.19	+0.9
1,909,294	+		MIT1002_01719	0.25	-0.1
1,909,333	+		MIT1002_01719	0.30	-1.8
1,909,333	+		MIT1002_01719	0.30	+0.9
1,909,341	-		MIT1002_01719	0.31	+1.2
1,909,377	+		MIT1002_01719	0.35	-1.1
1,909,399	-		MIT1002_01719	0.38	+0.5
1,909,422	-		MIT1002_01719	0.40	+0.3
1,909,427	-		MIT1002_01719	0.41	-0.1
1,909,453	+		MIT1002_01719	0.44	+0.5
1,909,471	+		MIT1002_01719	0.46	+0.4
1,909,471	+		MIT1002_01719	0.46	+1.3
1,909,471	+		MIT1002_01719	0.46	+0.3
1,909,471	+		MIT1002_01719	0.46	-0.7
1,909,479	-		MIT1002_01719	0.47	+0.1
1,909,479	-		MIT1002_01719	0.47	+0.0
1,909,479	-		MIT1002_01719	0.47	+0.6
1,909,479	-		MIT1002_01719	0.47	+0.5
1,909,491	-		MIT1002_01719	0.49	+0.3
1,909,508	-		MIT1002_01719	0.51	+0.3
1,909,639	+		MIT1002_01719	0.67	+0.0
1,909,647	-		MIT1002_01719	0.68	+1.0
1,909,674	+		MIT1002_01719	0.71	+1.0
1,909,679	+		MIT1002_01719	0.71	-2.3
1,909,687	-		MIT1002_01719	0.72	-0.1
1,909,695	+		MIT1002_01719	0.73	-1.5
1,909,710	+		MIT1002_01719	0.75	-1.5
1,909,725	-		MIT1002_01719	0.77	-0.2
1,909,730	-		MIT1002_01719	0.78	+0.7
1,909,761	-		MIT1002_01719	0.81	-0.1
1,909,785	+		MIT1002_01719	0.84	+0.0
1,909,798	-		MIT1002_01719	0.86	+1.2
1,909,804	+		MIT1002_01719	0.86	-0.3
1,909,812	+		MIT1002_01719	0.87	-0.2
1,909,812	+		MIT1002_01719	0.87	+0.2
1,909,812	+		MIT1002_01719	0.87	-0.1
1,909,820	-		MIT1002_01719	0.88	-0.6
1,909,820	-		MIT1002_01719	0.88	+0.1
1,909,820	-		MIT1002_01719	0.88	-2.1
1,909,852	+				-0.0
1,909,877	+				-1.5
1,909,885	-				-0.8
1,909,891	+				-0.5
1,909,979	+				-0.5
1,910,087	+		MIT1002_01720	0.13	+0.4
1,910,095	-		MIT1002_01720	0.14	+0.0
1,910,167	-		MIT1002_01720	0.25	-2.6
1,910,189	+		MIT1002_01720	0.28	+1.1
1,910,197	-		MIT1002_01720	0.29	+1.2
1,910,204	+		MIT1002_01720	0.31	+1.3
1,910,286	-		MIT1002_01720	0.43	-0.4
1,910,293	+		MIT1002_01720	0.44	-1.5
1,910,318	-		MIT1002_01720	0.47	-1.0
1,910,327	+		MIT1002_01720	0.49	-0.9
1,910,327	+		MIT1002_01720	0.49	-0.8
1,910,335	-		MIT1002_01720	0.50	+0.5
1,910,398	+		MIT1002_01720	0.59	-0.4
1,910,419	+		MIT1002_01720	0.62	+0.7
1,910,452	+		MIT1002_01720	0.67	+0.2
1,910,491	+		MIT1002_01720	0.73	-0.4
1,910,491	+		MIT1002_01720	0.73	+0.2
1,910,491	+		MIT1002_01720	0.73	-2.2
1,910,501	+		MIT1002_01720	0.74	+0.1
1,910,501	+		MIT1002_01720	0.74	+1.8
1,910,504	-		MIT1002_01720	0.75	+0.3
1,910,605	-		MIT1002_01720	0.90	+0.7
1,910,612	+				-1.2
1,910,620	-				+0.3
1,910,639	+				+0.6
1,910,679	+				-1.5