Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01712

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,900,684	+		MIT1002_01710	0.58	+0.3
1,900,689	+		MIT1002_01710	0.59	-1.4
1,900,690	+		MIT1002_01710	0.59	-0.3
1,900,765	-		MIT1002_01710	0.67	-0.1
1,900,773	-		MIT1002_01710	0.68	-0.6
1,900,785	+		MIT1002_01710	0.69	+0.9
1,900,869	+		MIT1002_01710	0.79	-0.4
1,900,897	-		MIT1002_01710	0.82	+0.8
1,900,982	-				+0.2
1,901,010	-				-0.2
1,901,010	-				+0.2
1,901,040	+				-0.3
1,901,101	+				+0.4
1,901,132	-		MIT1002_01711	0.12	-0.3
1,901,206	+		MIT1002_01711	0.23	-0.5
1,901,206	-		MIT1002_01711	0.23	+1.1
1,901,214	-		MIT1002_01711	0.25	-0.6
1,901,292	-		MIT1002_01711	0.37	-0.2
1,901,308	+		MIT1002_01711	0.39	-0.0
1,901,464	+		MIT1002_01711	0.64	-1.1
1,901,467	-		MIT1002_01711	0.64	-0.6
1,901,474	+		MIT1002_01711	0.65	-0.3
1,901,480	-		MIT1002_01711	0.66	-0.2
1,901,641	+				-0.7
1,901,645	-				+0.4
1,901,649	-				-0.9
1,901,659	-				-0.3
1,901,735	+				+1.8
1,901,741	-				-0.3
1,901,807	-		MIT1002_01712	0.16	-1.3
1,901,892	-		MIT1002_01712	0.27	-1.2
1,901,915	+		MIT1002_01712	0.30	+0.9
1,901,915	+		MIT1002_01712	0.30	-2.6
1,901,993	-		MIT1002_01712	0.39	-0.9
1,902,000	+		MIT1002_01712	0.40	+0.6
1,902,017	+		MIT1002_01712	0.43	+0.7
1,902,023	-		MIT1002_01712	0.43	-1.2
1,902,025	-		MIT1002_01712	0.44	-0.0
1,902,025	-		MIT1002_01712	0.44	+2.1
1,902,075	-		MIT1002_01712	0.50	-0.0
1,902,075	-		MIT1002_01712	0.50	-1.8
1,902,124	+		MIT1002_01712	0.56	-0.2
1,902,144	+		MIT1002_01712	0.59	+2.1
1,902,160	+		MIT1002_01712	0.61	+0.0
1,902,181	-		MIT1002_01712	0.63	+2.5
1,902,284	-		MIT1002_01712	0.77	+1.4
1,902,284	-		MIT1002_01712	0.77	-0.6
1,902,295	+		MIT1002_01712	0.78	+0.4
1,902,402	+				-0.9
1,902,402	+				-0.7
1,902,409	-				+0.4
1,902,409	-				-0.8
1,902,410	-				-0.7
1,902,425	+				-0.5
1,902,433	-				-0.2
1,902,466	-				-0.1
1,902,494	+				+0.3
1,902,502	-				+0.6
1,902,538	-				-1.5
1,902,546	-				-2.7
1,902,659	+				+1.4
1,902,837	+		MIT1002_01713	0.13	+1.1
1,902,872	+		MIT1002_01713	0.15	-0.1
1,902,882	+		MIT1002_01713	0.15	+2.3
1,902,882	+		MIT1002_01713	0.15	-0.9
1,902,882	+		MIT1002_01713	0.15	+0.7
1,902,890	-		MIT1002_01713	0.15	+0.5
1,902,890	-		MIT1002_01713	0.15	-0.0
1,902,952	-		MIT1002_01713	0.18	-0.5
1,902,962	+		MIT1002_01713	0.18	-0.6
1,902,999	-		MIT1002_01713	0.20	+1.5
1,903,007	-		MIT1002_01713	0.20	+0.1
1,903,007	-		MIT1002_01713	0.20	+1.1
1,903,007	-		MIT1002_01713	0.20	-1.3
1,903,020	-		MIT1002_01713	0.21	+0.9
1,903,051	-		MIT1002_01713	0.22	-0.6
1,903,066	+		MIT1002_01713	0.23	-0.5
1,903,091	-		MIT1002_01713	0.24	+2.1
1,903,152	-		MIT1002_01713	0.27	-0.9
1,903,167	-		MIT1002_01713	0.27	+0.2
1,903,217	-		MIT1002_01713	0.29	+1.2
1,903,217	-		MIT1002_01713	0.29	-0.8
1,903,325	-		MIT1002_01713	0.34	-0.4
1,903,325	-		MIT1002_01713	0.34	+1.1
1,903,325	-		MIT1002_01713	0.34	-0.9
1,903,325	-		MIT1002_01713	0.34	-1.8
1,903,325	-		MIT1002_01713	0.34	-1.0
1,903,325	-		MIT1002_01713	0.34	-0.9
1,903,327	+		MIT1002_01713	0.34	+1.8
1,903,335	-		MIT1002_01713	0.35	-0.5
1,903,403	+		MIT1002_01713	0.37	-0.0
1,903,426	-		MIT1002_01713	0.38	+1.5