Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01614

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,777,828	+		MIT1002_01612	0.90	-0.3
1,777,836	+		MIT1002_01612	0.90	-0.8
1,777,843	-				+1.4
1,777,891	-				-0.6
1,777,963	+				-0.0
1,777,963	+				-0.4
1,777,999	+				-0.1
1,777,999	+				-0.0
1,778,007	-				+0.5
1,778,007	-				+0.4
1,778,007	-				-0.4
1,778,082	-				+2.1
1,778,092	-				-0.0
1,778,164	+		MIT1002_01613	0.10	+0.1
1,778,168	-		MIT1002_01613	0.11	-0.6
1,778,196	-		MIT1002_01613	0.15	+1.2
1,778,243	-		MIT1002_01613	0.21	+0.2
1,778,310	-		MIT1002_01613	0.31	+0.7
1,778,412	-		MIT1002_01613	0.45	+2.5
1,778,417	+		MIT1002_01613	0.46	+0.7
1,778,448	-		MIT1002_01613	0.50	+2.5
1,778,477	-		MIT1002_01613	0.54	-1.5
1,778,481	-		MIT1002_01613	0.55	+0.4
1,778,618	+		MIT1002_01613	0.74	-0.2
1,778,626	-		MIT1002_01613	0.75	+2.1
1,778,626	-		MIT1002_01613	0.75	+1.6
1,778,626	-		MIT1002_01613	0.75	-1.1
1,778,679	+		MIT1002_01613	0.83	-1.5
1,778,735	-				+0.4
1,778,774	+				+0.6
1,778,863	+				+0.3
1,778,968	+		MIT1002_01614	0.22	+0.2
1,779,114	+		MIT1002_01614	0.41	+1.5
1,779,205	-		MIT1002_01614	0.53	+0.4
1,779,228	+		MIT1002_01614	0.56	+0.2
1,779,228	+		MIT1002_01614	0.56	+3.5
1,779,228	+		MIT1002_01614	0.56	-0.3
1,779,229	+		MIT1002_01614	0.56	-0.8
1,779,258	+		MIT1002_01614	0.60	-0.2
1,779,303	-		MIT1002_01614	0.66	+0.4
1,779,315	-		MIT1002_01614	0.67	+0.1
1,779,316	+		MIT1002_01614	0.68	-0.3
1,779,356	+		MIT1002_01614	0.73	-0.9
1,779,375	+		MIT1002_01614	0.75	+2.1
1,779,496	+				+0.1
1,779,511	-				+2.1
1,779,523	-				+1.4
1,779,601	+				-1.3
1,779,605	-				+0.5
1,779,629	+		MIT1002_01615	0.13	-0.3
1,779,637	-		MIT1002_01615	0.15	+1.3
1,779,637	-		MIT1002_01615	0.15	-0.2
1,779,646	+		MIT1002_01615	0.17	+0.9
1,779,665	+		MIT1002_01615	0.22	+1.6
1,779,777	-		MIT1002_01615	0.49	-0.5
1,779,809	+		MIT1002_01615	0.57	+1.3
1,779,809	+		MIT1002_01615	0.57	+0.3
1,779,809	-		MIT1002_01615	0.57	-0.3
1,779,817	-		MIT1002_01615	0.59	+0.4
1,779,817	-		MIT1002_01615	0.59	+0.6
1,779,817	-		MIT1002_01615	0.59	+0.2
1,779,817	-		MIT1002_01615	0.59	+0.5
1,779,817	-		MIT1002_01615	0.59	-1.5
1,779,844	+		MIT1002_01615	0.65	-1.8
1,779,861	-		MIT1002_01615	0.69	+0.1
1,779,934	-		MIT1002_01615	0.87	+0.5
1,780,105	+				+0.1
1,780,149	-				-0.5
1,780,151	+				-0.2
1,780,159	-				+1.7
1,780,159	-				+1.0
1,780,159	-				+0.3
1,780,159	-				+0.2
1,780,159	-				-0.3
1,780,202	+		MIT1002_01616	0.11	-0.6
1,780,202	+		MIT1002_01616	0.11	+0.1
1,780,228	-		MIT1002_01616	0.13	-1.2
1,780,327	+		MIT1002_01616	0.20	-0.2
1,780,343	+		MIT1002_01616	0.21	-1.7
1,780,371	+		MIT1002_01616	0.23	-0.4
1,780,403	+		MIT1002_01616	0.25	+1.1
1,780,405	+		MIT1002_01616	0.26	-0.8
1,780,413	-		MIT1002_01616	0.26	-0.0
1,780,423	-		MIT1002_01616	0.27	-1.1
1,780,429	+		MIT1002_01616	0.27	+2.1
1,780,490	+		MIT1002_01616	0.32	-1.4
1,780,493	+		MIT1002_01616	0.32	-1.6