Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01530

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,679,443	+		MIT1002_01529	0.45	-0.3
1,679,443	+		MIT1002_01529	0.45	-0.2
1,679,448	+		MIT1002_01529	0.45	-0.1
1,679,453	+		MIT1002_01529	0.46	+1.0
1,679,470	+		MIT1002_01529	0.48	+0.2
1,679,693	-		MIT1002_01529	0.74	+0.7
1,679,707	-		MIT1002_01529	0.76	-0.1
1,679,725	+		MIT1002_01529	0.78	+1.1
1,679,725	+		MIT1002_01529	0.78	-0.3
1,679,725	+		MIT1002_01529	0.78	+0.8
1,679,725	+		MIT1002_01529	0.78	-1.0
1,679,725	+		MIT1002_01529	0.78	-2.0
1,679,733	-		MIT1002_01529	0.79	-0.8
1,679,733	-		MIT1002_01529	0.79	-1.0
1,679,824	+		MIT1002_01529	0.89	-1.3
1,679,824	+		MIT1002_01529	0.89	+0.4
1,679,878	-				+0.3
1,679,909	+				-0.3
1,679,933	-				+1.0
1,679,944	+				-0.2
1,680,009	-				+1.0
1,680,094	-				-0.5
1,680,099	+				-0.7
1,680,100	-				-0.5
1,680,107	-				-0.8
1,680,294	-				-1.4
1,680,307	+				+0.8
1,680,317	+				-0.5
1,680,317	+				+0.8
1,680,323	-				-0.9
1,680,325	-				-0.3
1,680,464	+				-0.3
1,680,499	+				-2.0
1,680,499	+				-0.2
1,680,592	-		MIT1002_01530	0.12	-2.0
1,680,709	-		MIT1002_01530	0.17	-1.9
1,680,719	-		MIT1002_01530	0.18	+0.2
1,680,791	+		MIT1002_01530	0.21	+10.9
1,680,791	+		MIT1002_01530	0.21	+0.5
1,680,799	-		MIT1002_01530	0.22	-0.5
1,680,866	+		MIT1002_01530	0.25	-1.6
1,680,866	+		MIT1002_01530	0.25	+0.8
1,680,867	+		MIT1002_01530	0.25	+0.3
1,680,874	-		MIT1002_01530	0.25	-0.8
1,680,874	-		MIT1002_01530	0.25	+1.5
1,680,874	-		MIT1002_01530	0.25	+0.2
1,680,893	+		MIT1002_01530	0.26	+1.1
1,680,900	+		MIT1002_01530	0.26	+0.0
1,680,900	+		MIT1002_01530	0.26	+0.4
1,680,908	-		MIT1002_01530	0.27	+1.4
1,680,917	-		MIT1002_01530	0.27	-0.1
1,680,931	+		MIT1002_01530	0.28	+0.5
1,680,944	+		MIT1002_01530	0.29	-0.3
1,680,964	+		MIT1002_01530	0.30	-2.3
1,680,976	-		MIT1002_01530	0.30	+0.1
1,680,985	-		MIT1002_01530	0.31	+0.2
1,680,985	-		MIT1002_01530	0.31	+0.0
1,680,995	-		MIT1002_01530	0.31	+0.5
1,680,997	+		MIT1002_01530	0.31	+2.3
1,681,000	-		MIT1002_01530	0.31	-1.0
1,681,047	-		MIT1002_01530	0.34	-0.3
1,681,078	+		MIT1002_01530	0.35	-0.1
1,681,086	+		MIT1002_01530	0.35	+0.0
1,681,177	-		MIT1002_01530	0.40	+2.4
1,681,234	+		MIT1002_01530	0.43	-1.5
1,681,262	+		MIT1002_01530	0.44	+0.2
1,681,275	+		MIT1002_01530	0.45	-0.3
1,681,276	+		MIT1002_01530	0.45	+0.2
1,681,278	-		MIT1002_01530	0.45	-0.6
1,681,283	-		MIT1002_01530	0.45	-0.6
1,681,354	+		MIT1002_01530	0.48	-1.1
1,681,466	-		MIT1002_01530	0.54	-0.1
1,681,491	+		MIT1002_01530	0.55	-0.3
1,681,517	+		MIT1002_01530	0.56	-0.2
1,681,517	+		MIT1002_01530	0.56	+0.5
1,681,558	+		MIT1002_01530	0.58	-0.1
1,681,564	-		MIT1002_01530	0.59	+0.7
1,681,566	-		MIT1002_01530	0.59	+1.0
1,681,601	-		MIT1002_01530	0.60	+2.0
1,681,657	-		MIT1002_01530	0.63	-0.1
1,681,672	+		MIT1002_01530	0.64	-1.8
1,681,799	+		MIT1002_01530	0.70	+1.0
1,681,799	+		MIT1002_01530	0.70	+0.2
1,681,807	-		MIT1002_01530	0.70	+1.9
1,681,807	-		MIT1002_01530	0.70	+0.8
1,681,922	+		MIT1002_01530	0.76	+1.0
1,681,953	+		MIT1002_01530	0.77	+0.8
1,681,963	-		MIT1002_01530	0.78	+0.8
1,682,048	-		MIT1002_01530	0.82	-0.7
1,682,189	+		MIT1002_01530	0.89	-0.0
1,682,189	+		MIT1002_01530	0.89	-1.3
1,682,231	+				-0.3
1,682,231	+				+0.0
1,682,239	-				+0.0
1,682,257	+				-0.3
1,682,288	-				+0.2
1,682,408	-				-1.2
1,682,408	-				+0.5
1,682,444	-				+1.3
1,682,548	-		MIT1002_01531	0.12	+1.2
1,682,550	-		MIT1002_01531	0.12	-0.5
1,682,565	+		MIT1002_01531	0.13	-0.2
1,682,574	+		MIT1002_01531	0.14	-0.2
1,682,582	-		MIT1002_01531	0.15	+1.0
1,682,582	-		MIT1002_01531	0.15	-0.3
1,682,599	+		MIT1002_01531	0.16	-1.5
1,682,600	+		MIT1002_01531	0.16	+0.1
1,682,600	+		MIT1002_01531	0.16	+0.2
1,682,615	+		MIT1002_01531	0.17	-0.7
1,682,630	+		MIT1002_01531	0.19	-0.6
1,682,781	-		MIT1002_01531	0.32	-0.8
1,682,788	+		MIT1002_01531	0.33	+0.5
1,682,859	-		MIT1002_01531	0.39	+2.9
1,682,859	-		MIT1002_01531	0.39	-1.1
1,682,875	-		MIT1002_01531	0.40	-1.1
1,682,879	+		MIT1002_01531	0.41	-0.0
1,682,879	+		MIT1002_01531	0.41	+1.4
1,682,887	-		MIT1002_01531	0.41	-0.1
1,682,937	+		MIT1002_01531	0.46	-2.6
1,682,992	+		MIT1002_01531	0.51	+0.3
1,683,034	+		MIT1002_01531	0.54	-0.5
1,683,036	-		MIT1002_01531	0.55	-0.2
1,683,084	+		MIT1002_01531	0.59	+0.4
1,683,111	+		MIT1002_01531	0.61	+1.1
1,683,219	+		MIT1002_01531	0.71	-1.0
1,683,237	-		MIT1002_01531	0.72	+1.7
1,683,258	+		MIT1002_01531	0.74	-2.4
1,683,296	+		MIT1002_01531	0.78	-1.3
1,683,296	+		MIT1002_01531	0.78	-0.3
1,683,296	+		MIT1002_01531	0.78	+2.5
1,683,296	+		MIT1002_01531	0.78	-1.3
1,683,296	+		MIT1002_01531	0.78	-1.5
1,683,304	-		MIT1002_01531	0.78	-1.0
1,683,306	+		MIT1002_01531	0.78	+0.8
1,683,306	+		MIT1002_01531	0.78	-0.8
1,683,306	+		MIT1002_01531	0.78	-0.2
1,683,314	-		MIT1002_01531	0.79	-0.9
1,683,314	-		MIT1002_01531	0.79	-0.0
1,683,314	-		MIT1002_01531	0.79	+0.5
1,683,314	-		MIT1002_01531	0.79	+1.8
1,683,314	-		MIT1002_01531	0.79	-0.6
1,683,325	+		MIT1002_01531	0.80	-0.4