Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01286

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,419,359	-		MIT1002_01285	0.41	-0.2
1,419,370	-		MIT1002_01285	0.42	-2.5
1,419,396	-		MIT1002_01285	0.44	+0.6
1,419,442	+		MIT1002_01285	0.49	-0.9
1,419,460	-		MIT1002_01285	0.51	+0.0
1,419,464	+		MIT1002_01285	0.52	-1.2
1,419,489	+		MIT1002_01285	0.54	-1.3
1,419,535	-		MIT1002_01285	0.59	+1.1
1,419,577	-		MIT1002_01285	0.63	-0.4
1,419,623	+		MIT1002_01285	0.68	-0.4
1,419,682	+		MIT1002_01285	0.74	-0.9
1,419,682	+		MIT1002_01285	0.74	+0.5
1,419,682	+		MIT1002_01285	0.74	-1.1
1,419,682	+		MIT1002_01285	0.74	+1.4
1,419,682	+		MIT1002_01285	0.74	-0.7
1,419,682	+		MIT1002_01285	0.74	-1.5
1,419,682	+		MIT1002_01285	0.74	-1.5
1,419,690	-		MIT1002_01285	0.75	-1.2
1,419,690	-		MIT1002_01285	0.75	-2.8
1,419,690	-		MIT1002_01285	0.75	-0.7
1,419,690	-		MIT1002_01285	0.75	-0.7
1,419,690	-		MIT1002_01285	0.75	-1.8
1,419,692	+		MIT1002_01285	0.75	-0.1
1,419,717	+		MIT1002_01285	0.78	+0.8
1,419,718	-		MIT1002_01285	0.78	+1.0
1,419,803	-		MIT1002_01285	0.87	-0.0
1,419,807	-		MIT1002_01285	0.87	+1.3
1,419,829	+		MIT1002_01285	0.90	-1.1
1,419,896	-				-0.1
1,420,047	+				+0.3
1,420,047	+				-1.0
1,420,047	+				+0.8
1,420,047	+				+0.8
1,420,047	+				-0.2
1,420,055	-				+0.2
1,420,055	-				-0.2
1,420,055	-				-1.2
1,420,071	+				+2.4
1,420,103	-				+1.1
1,420,183	+				+0.4
1,420,210	+				-0.3
1,420,210	+				+0.7
1,420,226	+				-1.0
1,420,234	-				+0.2
1,420,238	+				-1.7
1,420,417	-				+1.1
1,420,426	-				-0.0
1,420,457	+				-2.2
1,420,459	+				+0.1
1,420,533	-		MIT1002_01286	0.13	-2.3
1,420,638	-		MIT1002_01286	0.21	+0.6
1,420,698	+		MIT1002_01286	0.26	-1.3
1,420,716	-		MIT1002_01286	0.27	-1.7
1,420,890	+		MIT1002_01286	0.41	+0.9
1,420,890	+		MIT1002_01286	0.41	-0.9
1,420,890	-		MIT1002_01286	0.41	-0.3
1,420,890	-		MIT1002_01286	0.41	-0.4
1,420,965	-		MIT1002_01286	0.46	-0.6
1,420,967	+		MIT1002_01286	0.47	-2.4
1,420,978	+		MIT1002_01286	0.47	-1.9
1,421,012	+		MIT1002_01286	0.50	-1.9
1,421,045	+		MIT1002_01286	0.52	+0.4
1,421,053	-		MIT1002_01286	0.53	-2.2
1,421,055	+		MIT1002_01286	0.53	-0.7
1,421,055	+		MIT1002_01286	0.53	+1.1
1,421,055	+		MIT1002_01286	0.53	-0.6
1,421,058	-		MIT1002_01286	0.53	-0.6
1,421,063	-		MIT1002_01286	0.54	+0.2
1,421,063	-		MIT1002_01286	0.54	-1.1
1,421,063	-		MIT1002_01286	0.54	-0.0
1,421,063	-		MIT1002_01286	0.54	-1.3
1,421,112	-		MIT1002_01286	0.58	-0.2
1,421,122	-		MIT1002_01286	0.58	-0.6
1,421,237	+		MIT1002_01286	0.67	+0.1
1,421,243	-		MIT1002_01286	0.68	-1.0
1,421,245	-		MIT1002_01286	0.68	-0.1
1,421,355	-		MIT1002_01286	0.76	+0.5
1,421,356	-		MIT1002_01286	0.76	+0.2
1,421,398	+		MIT1002_01286	0.79	+0.1
1,421,406	-		MIT1002_01286	0.80	-0.2
1,421,406	-		MIT1002_01286	0.80	-0.4
1,421,457	-		MIT1002_01286	0.84	-1.6
1,421,605	+				-0.9
1,421,605	+				-2.3
1,421,613	-				+1.8
1,421,616	-				-0.0
1,421,717	+				-0.4
1,421,763	-				-1.0
1,421,862	+				+0.3
1,421,862	-				-0.2
1,421,862	-				+1.1
1,421,919	+		MIT1002_01287	0.12	+1.6
1,421,947	-		MIT1002_01287	0.13	+1.1
1,422,047	+		MIT1002_01287	0.17	-1.3
1,422,048	+		MIT1002_01287	0.18	+0.8
1,422,118	-		MIT1002_01287	0.21	+0.1
1,422,216	+		MIT1002_01287	0.25	-0.7
1,422,216	+		MIT1002_01287	0.25	+0.2
1,422,266	+		MIT1002_01287	0.28	-0.4
1,422,266	+		MIT1002_01287	0.28	-1.0
1,422,266	+		MIT1002_01287	0.28	-0.3
1,422,274	-		MIT1002_01287	0.28	-0.3
1,422,301	-		MIT1002_01287	0.29	+1.2
1,422,320	+		MIT1002_01287	0.30	-0.9
1,422,343	-		MIT1002_01287	0.31	-0.0
1,422,388	-		MIT1002_01287	0.33	+0.6
1,422,501	-		MIT1002_01287	0.39	-1.2
1,422,617	-		MIT1002_01287	0.44	+0.0