Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01101

Experiment: monoculture; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 5
1,208,073	+		MIT1002_01100	0.56	+1.1
1,208,073	+		MIT1002_01100	0.56	-1.2
1,208,073	+		MIT1002_01100	0.56	-0.2
1,208,073	+		MIT1002_01100	0.56	-0.2
1,208,080	+		MIT1002_01100	0.56	-1.0
1,208,081	-		MIT1002_01100	0.56	+0.9
1,208,081	-		MIT1002_01100	0.56	-1.1
1,208,081	-		MIT1002_01100	0.56	+0.0
1,208,081	-		MIT1002_01100	0.56	+0.3
1,208,136	-		MIT1002_01100	0.59	+0.7
1,208,171	-		MIT1002_01100	0.60	-0.9
1,208,240	-		MIT1002_01100	0.64	+0.3
1,208,242	+		MIT1002_01100	0.64	-1.2
1,208,275	+		MIT1002_01100	0.65	-0.8
1,208,309	+		MIT1002_01100	0.67	-1.0
1,208,313	-		MIT1002_01100	0.67	-2.0
1,208,313	-		MIT1002_01100	0.67	-1.7
1,208,313	-		MIT1002_01100	0.67	+1.2
1,208,317	-		MIT1002_01100	0.67	+0.4
1,208,350	-		MIT1002_01100	0.69	-0.4
1,208,350	-		MIT1002_01100	0.69	-1.9
1,208,356	+		MIT1002_01100	0.69	+0.5
1,208,356	+		MIT1002_01100	0.69	+1.1
1,208,364	-		MIT1002_01100	0.70	-1.8
1,208,364	-		MIT1002_01100	0.70	+0.5
1,208,428	+		MIT1002_01100	0.73	-1.8
1,208,484	+		MIT1002_01100	0.75	+0.6
1,208,512	+		MIT1002_01100	0.77	+0.2
1,208,520	-		MIT1002_01100	0.77	+0.9
1,208,577	+		MIT1002_01100	0.80	-0.1
1,208,577	+		MIT1002_01100	0.80	-1.2
1,208,618	+		MIT1002_01100	0.82	+0.6
1,208,618	+		MIT1002_01100	0.82	-0.3
1,208,710	+		MIT1002_01100	0.86	+1.9
1,208,797	-				+1.0
1,208,855	-				-2.3
1,208,876	+				-0.4
1,208,894	-				-0.1
1,208,964	-				+0.5
1,209,093	+				+1.9
1,209,142	+				-1.8
1,209,150	-				-1.2
1,209,150	-				-1.1
1,209,167	-				-0.4
1,209,182	-		MIT1002_01101	0.11	-1.3
1,209,239	-		MIT1002_01101	0.15	+3.5
1,209,251	-		MIT1002_01101	0.15	-2.0
1,209,272	-		MIT1002_01101	0.17	-2.2
1,209,287	+		MIT1002_01101	0.18	-1.7
1,209,512	-		MIT1002_01101	0.34	+0.9
1,209,542	+		MIT1002_01101	0.36	+0.0
1,209,560	-		MIT1002_01101	0.37	+1.4
1,209,666	+		MIT1002_01101	0.45	-0.1
1,209,666	+		MIT1002_01101	0.45	-1.1
1,209,666	+		MIT1002_01101	0.45	+0.3
1,209,666	+		MIT1002_01101	0.45	-2.0
1,209,669	-		MIT1002_01101	0.45	+1.4
1,209,674	-		MIT1002_01101	0.45	+0.9
1,209,674	-		MIT1002_01101	0.45	-1.0
1,209,700	+		MIT1002_01101	0.47	+0.6
1,209,714	+		MIT1002_01101	0.48	-0.5
1,209,736	+		MIT1002_01101	0.50	-0.7
1,209,799	-		MIT1002_01101	0.54	+0.0
1,209,823	+		MIT1002_01101	0.56	-0.3
1,209,931	-		MIT1002_01101	0.64	+0.2
1,209,974	-		MIT1002_01101	0.67	-0.9
1,210,066	+		MIT1002_01101	0.73	+1.4
1,210,066	+		MIT1002_01101	0.73	-0.8
1,210,176	+		MIT1002_01101	0.81	-1.2
1,210,237	+		MIT1002_01101	0.85	-0.2
1,210,247	+		MIT1002_01101	0.86	+0.7
1,210,247	+		MIT1002_01101	0.86	+0.8
1,210,255	-		MIT1002_01101	0.87	+0.7
1,210,255	-		MIT1002_01101	0.87	-0.2
1,210,255	-		MIT1002_01101	0.87	-1.2
1,210,255	-		MIT1002_01101	0.87	+1.2
1,210,260	-		MIT1002_01101	0.87	+1.5
1,210,263	-		MIT1002_01101	0.87	-0.2
1,210,263	-		MIT1002_01101	0.87	-0.2
1,210,289	-		MIT1002_01101	0.89	+1.2
1,210,324	+				-1.5
1,210,337	+				-0.6
1,210,383	-				-0.7
1,210,398	+				-0.4
1,210,404	+				+0.7
1,210,536	-		MIT1002_01102	0.10	+0.7
1,210,585	+		MIT1002_01102	0.16	+0.6
1,210,586	+		MIT1002_01102	0.16	+0.9
1,210,612	+		MIT1002_01102	0.19	-0.0
1,210,613	+		MIT1002_01102	0.19	-0.7
1,210,629	+		MIT1002_01102	0.21	-2.5
1,210,689	+		MIT1002_01102	0.28	+0.7
1,210,796	+		MIT1002_01102	0.40	+0.3
1,210,796	+		MIT1002_01102	0.40	-2.0
1,210,804	-		MIT1002_01102	0.41	+1.5
1,210,877	+		MIT1002_01102	0.49	-0.2
1,210,885	-		MIT1002_01102	0.50	+0.2
1,210,885	-		MIT1002_01102	0.50	+0.3
1,210,904	-		MIT1002_01102	0.53	+1.7
1,210,911	+		MIT1002_01102	0.53	+0.7
1,211,230	+				-0.2
1,211,377	-				+1.0
1,211,390	-		MIT1002_01103	0.11	+1.5
1,211,396	-		MIT1002_01103	0.12	+1.3