Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00732 and MIT1002_00733 are separated by 173 nucleotides MIT1002_00733 and MIT1002_00734 are separated by 479 nucleotides
MIT1002_00732: MIT1002_00732 - Methyl-accepting chemotaxis protein 4, at 802,653 to 804,272
_00732
MIT1002_00733: MIT1002_00733 - Sigma-70, at 804,446 to 806,278
_00733
MIT1002_00734: MIT1002_00734 - DNA primase, at 806,758 to 808,536
_00734
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.473 kb on - strand, within MIT1002_00732 at 803.499 kb on + strand, within MIT1002_00732 at 803.499 kb on - strand, within MIT1002_00732 at 803.515 kb on + strand, within MIT1002_00732 at 803.526 kb on - strand, within MIT1002_00732 at 803.587 kb on + strand, within MIT1002_00732 at 803.587 kb on + strand, within MIT1002_00732 at 803.589 kb on + strand, within MIT1002_00732 at 803.595 kb on - strand, within MIT1002_00732 at 803.633 kb on - strand, within MIT1002_00732 at 803.681 kb on - strand, within MIT1002_00732 at 803.777 kb on + strand, within MIT1002_00732 at 803.785 kb on - strand, within MIT1002_00732 at 803.788 kb on + strand, within MIT1002_00732 at 803.793 kb on + strand, within MIT1002_00732 at 803.852 kb on + strand, within MIT1002_00732 at 803.852 kb on + strand, within MIT1002_00732 at 803.852 kb on + strand, within MIT1002_00732 at 803.852 kb on + strand, within MIT1002_00732 at 803.852 kb on + strand, within MIT1002_00732 at 803.890 kb on + strand, within MIT1002_00732 at 803.898 kb on - strand, within MIT1002_00732 at 803.935 kb on + strand, within MIT1002_00732 at 803.953 kb on - strand, within MIT1002_00732 at 803.997 kb on - strand, within MIT1002_00732 at 804.018 kb on - strand, within MIT1002_00732 at 804.066 kb on - strand, within MIT1002_00732 at 804.098 kb on + strand, within MIT1002_00732 at 804.103 kb on + strand, within MIT1002_00732 at 804.111 kb on + strand at 804.119 kb on - strand at 804.121 kb on + strand at 804.195 kb on + strand at 804.234 kb on - strand at 804.265 kb on + strand at 804.385 kb on + strand at 806.410 kb on - strand at 806.410 kb on - strand at 806.431 kb on - strand at 806.509 kb on - strand at 806.615 kb on + strand at 806.628 kb on + strand at 806.630 kb on + strand at 806.639 kb on + strand at 806.729 kb on - strand at 806.737 kb on - strand at 806.750 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 803,473 - MIT1002_00732 0.51 -0.2 803,499 + MIT1002_00732 0.52 -1.1 803,499 - MIT1002_00732 0.52 -0.1 803,515 + MIT1002_00732 0.53 -1.1 803,526 - MIT1002_00732 0.54 +1.6 803,587 + MIT1002_00732 0.58 +0.3 803,587 + MIT1002_00732 0.58 -0.2 803,589 + MIT1002_00732 0.58 +0.2 803,595 - MIT1002_00732 0.58 +0.8 803,633 - MIT1002_00732 0.60 -2.0 803,681 - MIT1002_00732 0.63 +0.3 803,777 + MIT1002_00732 0.69 -1.3 803,785 - MIT1002_00732 0.70 -2.0 803,788 + MIT1002_00732 0.70 -1.2 803,793 + MIT1002_00732 0.70 -0.8 803,852 + MIT1002_00732 0.74 +0.7 803,852 + MIT1002_00732 0.74 +1.8 803,852 + MIT1002_00732 0.74 -0.4 803,852 + MIT1002_00732 0.74 +3.6 803,852 + MIT1002_00732 0.74 -1.2 803,890 + MIT1002_00732 0.76 -1.1 803,898 - MIT1002_00732 0.77 -0.9 803,935 + MIT1002_00732 0.79 +0.0 803,953 - MIT1002_00732 0.80 +1.4 803,997 - MIT1002_00732 0.83 -0.6 804,018 - MIT1002_00732 0.84 -0.6 804,066 - MIT1002_00732 0.87 -0.9 804,098 + MIT1002_00732 0.89 -0.1 804,103 + MIT1002_00732 0.90 +0.1 804,111 + -0.4 804,119 - -2.0 804,121 + -0.5 804,195 + -0.8 804,234 - -0.9 804,265 + -0.2 804,385 + -0.7 806,410 - +0.0 806,410 - -0.9 806,431 - +0.8 806,509 - -0.1 806,615 + +1.1 806,628 + +1.1 806,630 + +1.5 806,639 + +0.8 806,729 - -0.5 806,737 - -0.8 806,750 + -2.4
Or see this region's nucleotide sequence