Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00599

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00598 and MIT1002_00599 overlap by 10 nucleotidesMIT1002_00599 and MIT1002_00600 overlap by 8 nucleotides MIT1002_00598: MIT1002_00598 - hypothetical protein, at 648,207 to 650,120 _00598 MIT1002_00599: MIT1002_00599 - hypothetical protein, at 650,111 to 652,126 _00599 MIT1002_00600: MIT1002_00600 - hypothetical protein, at 652,119 to 652,571 _00600 Position (kb) 650 651 652 653Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 649.127 kb on - strand, within MIT1002_00598at 649.135 kb on - strand, within MIT1002_00598at 649.191 kb on + strand, within MIT1002_00598at 649.303 kb on + strand, within MIT1002_00598at 649.403 kb on - strand, within MIT1002_00598at 649.610 kb on - strand, within MIT1002_00598at 649.635 kb on - strand, within MIT1002_00598at 649.635 kb on - strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.701 kb on + strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.709 kb on - strand, within MIT1002_00598at 649.757 kb on - strand, within MIT1002_00598at 649.783 kb on + strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.791 kb on - strand, within MIT1002_00598at 649.874 kb on + strand, within MIT1002_00598at 649.917 kb on + strand, within MIT1002_00598at 649.970 kb on - strandat 650.068 kb on + strandat 650.076 kb on - strandat 650.114 kb on + strandat 650.122 kb on - strandat 650.178 kb on - strandat 650.245 kb on + strandat 650.248 kb on - strandat 650.321 kb on + strand, within MIT1002_00599at 650.399 kb on - strand, within MIT1002_00599at 650.399 kb on - strand, within MIT1002_00599at 650.559 kb on + strand, within MIT1002_00599at 650.567 kb on - strand, within MIT1002_00599at 650.567 kb on - strand, within MIT1002_00599at 650.666 kb on + strand, within MIT1002_00599at 650.666 kb on + strand, within MIT1002_00599at 650.674 kb on - strand, within MIT1002_00599at 650.697 kb on + strand, within MIT1002_00599at 650.829 kb on + strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.077 kb on - strand, within MIT1002_00599at 651.157 kb on + strand, within MIT1002_00599at 651.210 kb on - strand, within MIT1002_00599at 651.212 kb on + strand, within MIT1002_00599at 651.263 kb on + strand, within MIT1002_00599at 651.273 kb on + strand, within MIT1002_00599at 651.281 kb on - strand, within MIT1002_00599at 651.287 kb on + strand, within MIT1002_00599at 651.290 kb on - strand, within MIT1002_00599at 651.292 kb on + strand, within MIT1002_00599at 651.292 kb on + strand, within MIT1002_00599at 651.293 kb on - strand, within MIT1002_00599at 651.295 kb on - strand, within MIT1002_00599at 651.318 kb on + strand, within MIT1002_00599at 651.326 kb on - strand, within MIT1002_00599at 651.375 kb on + strand, within MIT1002_00599at 651.375 kb on + strand, within MIT1002_00599at 651.375 kb on + strand, within MIT1002_00599at 651.383 kb on - strand, within MIT1002_00599at 651.383 kb on - strand, within MIT1002_00599at 651.383 kb on - strand, within MIT1002_00599at 651.383 kb on - strand, within MIT1002_00599at 651.383 kb on - strand, within MIT1002_00599at 651.391 kb on - strand, within MIT1002_00599at 651.391 kb on - strand, within MIT1002_00599at 651.394 kb on + strand, within MIT1002_00599at 651.412 kb on - strand, within MIT1002_00599at 651.445 kb on + strand, within MIT1002_00599at 651.452 kb on + strand, within MIT1002_00599at 651.460 kb on - strand, within MIT1002_00599at 651.499 kb on - strand, within MIT1002_00599at 651.580 kb on + strand, within MIT1002_00599at 651.588 kb on - strand, within MIT1002_00599at 651.692 kb on - strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.694 kb on + strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.702 kb on - strand, within MIT1002_00599at 651.716 kb on - strand, within MIT1002_00599at 651.821 kb on - strand, within MIT1002_00599at 651.823 kb on + strand, within MIT1002_00599at 651.823 kb on + strand, within MIT1002_00599at 651.831 kb on - strand, within MIT1002_00599at 651.833 kb on + strand, within MIT1002_00599at 651.839 kb on + strand, within MIT1002_00599at 651.865 kb on + strand, within MIT1002_00599at 651.878 kb on + strand, within MIT1002_00599at 651.924 kb on + strand, within MIT1002_00599at 651.955 kb on + strandat 652.001 kb on - strandat 652.059 kb on + strandat 652.059 kb on + strandat 652.067 kb on + strandat 652.067 kb on - strandat 652.067 kb on - strandat 652.204 kb on - strand, within MIT1002_00600at 652.356 kb on - strand, within MIT1002_00600at 652.358 kb on + strand, within MIT1002_00600at 652.358 kb on + strand, within MIT1002_00600at 652.366 kb on - strand, within MIT1002_00600at 652.366 kb on - strand, within MIT1002_00600at 652.366 kb on - strand, within MIT1002_00600at 652.401 kb on - strand, within MIT1002_00600at 652.417 kb on + strand, within MIT1002_00600at 652.461 kb on + strand, within MIT1002_00600at 652.469 kb on - strand, within MIT1002_00600at 652.498 kb on + strand, within MIT1002_00600at 652.498 kb on + strand, within MIT1002_00600at 652.498 kb on + strand, within MIT1002_00600at 652.506 kb on - strand, within MIT1002_00600at 652.525 kb on - strand, within MIT1002_00600at 652.534 kb on + strandat 652.542 kb on - strandat 652.542 kb on - strandat 652.542 kb on - strandat 652.543 kb on - strandat 652.546 kb on + strandat 652.593 kb on - strandat 652.658 kb on + strandat 652.659 kb on + strandat 652.666 kb on - strandat 652.666 kb on - strandat 652.680 kb on + strandat 652.714 kb on + strandat 652.714 kb on + strandat 652.720 kb on - strandat 652.720 kb on - strandat 652.737 kb on - strandat 652.737 kb on - strandat 652.767 kb on + strandat 652.768 kb on + strandat 652.769 kb on - strandat 652.776 kb on - strandat 652.790 kb on + strandat 652.827 kb on + strandat 652.918 kb on + strandat 652.919 kb on - strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.934 kb on + strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.942 kb on - strandat 652.946 kb on + strandat 652.946 kb on + strandat 652.954 kb on - strandat 652.969 kb on - strandat 652.982 kb on + strandat 653.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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649,127 - MIT1002_00598 0.48 -0.4
649,135 - MIT1002_00598 0.48 -0.8
649,191 + MIT1002_00598 0.51 +0.7
649,303 + MIT1002_00598 0.57 -0.7
649,403 - MIT1002_00598 0.62 +1.5
649,610 - MIT1002_00598 0.73 +0.3
649,635 - MIT1002_00598 0.75 -0.1
649,635 - MIT1002_00598 0.75 +0.3
649,701 + MIT1002_00598 0.78 +1.1
649,701 + MIT1002_00598 0.78 +1.0
649,701 + MIT1002_00598 0.78 +1.3
649,709 - MIT1002_00598 0.78 -0.9
649,709 - MIT1002_00598 0.78 +0.3
649,709 - MIT1002_00598 0.78 +0.0
649,709 - MIT1002_00598 0.78 +1.0
649,709 - MIT1002_00598 0.78 -0.4
649,709 - MIT1002_00598 0.78 -0.0
649,709 - MIT1002_00598 0.78 +1.5
649,757 - MIT1002_00598 0.81 +1.6
649,783 + MIT1002_00598 0.82 -1.4
649,791 - MIT1002_00598 0.83 -0.7
649,791 - MIT1002_00598 0.83 -1.0
649,791 - MIT1002_00598 0.83 -0.1
649,874 + MIT1002_00598 0.87 +0.1
649,917 + MIT1002_00598 0.89 -1.1
649,970 - -1.1
650,068 + -1.6
650,076 - +2.6
650,114 + +0.4
650,122 - +0.4
650,178 - -0.6
650,245 + +0.4
650,248 - -0.4
650,321 + MIT1002_00599 0.10 -1.1
650,399 - MIT1002_00599 0.14 -0.8
650,399 - MIT1002_00599 0.14 +1.4
650,559 + MIT1002_00599 0.22 -1.0
650,567 - MIT1002_00599 0.23 +1.1
650,567 - MIT1002_00599 0.23 +0.4
650,666 + MIT1002_00599 0.28 +1.7
650,666 + MIT1002_00599 0.28 -1.2
650,674 - MIT1002_00599 0.28 -1.7
650,697 + MIT1002_00599 0.29 -1.4
650,829 + MIT1002_00599 0.36 +0.6
651,077 - MIT1002_00599 0.48 -0.2
651,077 - MIT1002_00599 0.48 +0.2
651,077 - MIT1002_00599 0.48 -1.9
651,077 - MIT1002_00599 0.48 +1.3
651,157 + MIT1002_00599 0.52 +1.2
651,210 - MIT1002_00599 0.55 +1.1
651,212 + MIT1002_00599 0.55 -0.0
651,263 + MIT1002_00599 0.57 -0.0
651,273 + MIT1002_00599 0.58 -0.5
651,281 - MIT1002_00599 0.58 +0.8
651,287 + MIT1002_00599 0.58 +0.3
651,290 - MIT1002_00599 0.58 +0.5
651,292 + MIT1002_00599 0.59 +1.3
651,292 + MIT1002_00599 0.59 -0.8
651,293 - MIT1002_00599 0.59 -1.4
651,295 - MIT1002_00599 0.59 +0.7
651,318 + MIT1002_00599 0.60 -2.7
651,326 - MIT1002_00599 0.60 -1.1
651,375 + MIT1002_00599 0.63 +0.4
651,375 + MIT1002_00599 0.63 -0.6
651,375 + MIT1002_00599 0.63 -0.4
651,383 - MIT1002_00599 0.63 -0.4
651,383 - MIT1002_00599 0.63 +0.4
651,383 - MIT1002_00599 0.63 +0.2
651,383 - MIT1002_00599 0.63 -0.9
651,383 - MIT1002_00599 0.63 -0.1
651,391 - MIT1002_00599 0.63 -0.4
651,391 - MIT1002_00599 0.63 -2.4
651,394 + MIT1002_00599 0.64 +0.3
651,412 - MIT1002_00599 0.65 +0.3
651,445 + MIT1002_00599 0.66 +0.1
651,452 + MIT1002_00599 0.67 +1.9
651,460 - MIT1002_00599 0.67 -1.2
651,499 - MIT1002_00599 0.69 -0.9
651,580 + MIT1002_00599 0.73 +0.6
651,588 - MIT1002_00599 0.73 +0.5
651,692 - MIT1002_00599 0.78 +0.9
651,694 + MIT1002_00599 0.79 -0.2
651,694 + MIT1002_00599 0.79 -1.0
651,694 + MIT1002_00599 0.79 -2.1
651,694 + MIT1002_00599 0.79 +1.4
651,694 + MIT1002_00599 0.79 -0.4
651,694 + MIT1002_00599 0.79 +0.6
651,694 + MIT1002_00599 0.79 -1.0
651,694 + MIT1002_00599 0.79 -1.0
651,702 - MIT1002_00599 0.79 -2.0
651,702 - MIT1002_00599 0.79 +1.0
651,702 - MIT1002_00599 0.79 +2.1
651,702 - MIT1002_00599 0.79 -1.6
651,702 - MIT1002_00599 0.79 -1.8
651,702 - MIT1002_00599 0.79 -0.9
651,702 - MIT1002_00599 0.79 -2.2
651,702 - MIT1002_00599 0.79 +3.9
651,716 - MIT1002_00599 0.80 -0.4
651,821 - MIT1002_00599 0.85 +0.5
651,823 + MIT1002_00599 0.85 +0.8
651,823 + MIT1002_00599 0.85 +0.9
651,831 - MIT1002_00599 0.85 +0.4
651,833 + MIT1002_00599 0.85 -0.1
651,839 + MIT1002_00599 0.86 +0.2
651,865 + MIT1002_00599 0.87 -0.0
651,878 + MIT1002_00599 0.88 +0.7
651,924 + MIT1002_00599 0.90 -1.3
651,955 + -2.9
652,001 - +1.6
652,059 + -0.1
652,059 + +0.1
652,067 + -0.8
652,067 - -0.4
652,067 - -2.0
652,204 - MIT1002_00600 0.19 +2.0
652,356 - MIT1002_00600 0.52 -0.4
652,358 + MIT1002_00600 0.53 -0.3
652,358 + MIT1002_00600 0.53 +0.8
652,366 - MIT1002_00600 0.55 -0.9
652,366 - MIT1002_00600 0.55 -0.7
652,366 - MIT1002_00600 0.55 +0.9
652,401 - MIT1002_00600 0.62 -1.3
652,417 + MIT1002_00600 0.66 +0.4
652,461 + MIT1002_00600 0.75 +0.4
652,469 - MIT1002_00600 0.77 -0.1
652,498 + MIT1002_00600 0.84 -0.4
652,498 + MIT1002_00600 0.84 -0.4
652,498 + MIT1002_00600 0.84 -1.5
652,506 - MIT1002_00600 0.85 -0.3
652,525 - MIT1002_00600 0.90 +0.3
652,534 + -0.5
652,542 - +0.7
652,542 - -1.5
652,542 - -0.4
652,543 - +0.6
652,546 + -1.0
652,593 - -1.0
652,658 + -0.0
652,659 + +0.0
652,666 - -0.2
652,666 - -0.1
652,680 + +0.9
652,714 + +1.9
652,714 + +0.1
652,720 - -0.1
652,720 - -0.9
652,737 - -0.2
652,737 - +1.3
652,767 + -1.4
652,768 + -0.8
652,769 - +1.6
652,776 - +0.8
652,790 + +1.3
652,827 + +0.6
652,918 + -0.8
652,919 - -0.9
652,934 + +1.0
652,934 + -0.5
652,934 + +1.0
652,934 + -0.7
652,934 + +2.0
652,934 + +0.0
652,934 + -0.1
652,942 - -0.0
652,942 - +1.0
652,942 - +0.0
652,942 - +0.3
652,942 - +0.2
652,942 - +0.3
652,942 - +0.5
652,942 - -1.4
652,942 - -0.8
652,946 + +1.3
652,946 + -0.5
652,954 - +0.4
652,969 - -1.9
652,982 + +0.1
653,032 + -0.4

Or see this region's nucleotide sequence