Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00529

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00527 and MIT1002_00528 are separated by 283 nucleotidesMIT1002_00528 and MIT1002_00529 are separated by 287 nucleotidesMIT1002_00529 and MIT1002_00530 are separated by 153 nucleotidesMIT1002_00530 and MIT1002_00531 are separated by 264 nucleotides MIT1002_00527: MIT1002_00527 - Prolyl tripeptidyl peptidase precursor, at 572,893 to 575,001 _00527 MIT1002_00528: MIT1002_00528 - putative membrane protein, at 575,285 to 575,617 _00528 MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774 _00529 MIT1002_00530: MIT1002_00530 - hypothetical protein, at 576,928 to 577,356 _00530 MIT1002_00531: MIT1002_00531 - cysteine desulfurase, SufS family, at 577,621 to 578,799 _00531 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 574.906 kb on + strandat 574.909 kb on - strandat 574.955 kb on - strandat 575.041 kb on - strandat 575.041 kb on - strandat 575.058 kb on + strandat 575.060 kb on + strandat 575.066 kb on - strandat 575.117 kb on - strandat 575.213 kb on - strandat 575.263 kb on - strandat 575.266 kb on + strandat 575.275 kb on - strandat 575.276 kb on + strandat 575.337 kb on - strand, within MIT1002_00528at 575.450 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.452 kb on - strand, within MIT1002_00528at 575.463 kb on + strand, within MIT1002_00528at 575.494 kb on + strand, within MIT1002_00528at 575.508 kb on - strand, within MIT1002_00528at 575.614 kb on + strandat 575.615 kb on + strandat 575.622 kb on - strandat 575.623 kb on - strandat 575.636 kb on + strandat 575.675 kb on + strandat 575.683 kb on - strandat 575.751 kb on + strandat 575.761 kb on - strandat 575.835 kb on + strandat 575.835 kb on + strandat 575.858 kb on + strandat 575.895 kb on + strandat 575.895 kb on + strandat 575.975 kb on + strandat 576.026 kb on + strand, within MIT1002_00529at 576.094 kb on + strand, within MIT1002_00529at 576.107 kb on - strand, within MIT1002_00529at 576.172 kb on - strand, within MIT1002_00529at 576.193 kb on + strand, within MIT1002_00529at 576.201 kb on - strand, within MIT1002_00529at 576.309 kb on - strand, within MIT1002_00529at 576.344 kb on + strand, within MIT1002_00529at 576.351 kb on + strand, within MIT1002_00529at 576.358 kb on - strand, within MIT1002_00529at 576.408 kb on - strand, within MIT1002_00529at 576.457 kb on + strand, within MIT1002_00529at 576.469 kb on + strand, within MIT1002_00529at 576.537 kb on + strand, within MIT1002_00529at 576.627 kb on - strand, within MIT1002_00529at 576.639 kb on + strand, within MIT1002_00529at 576.688 kb on - strandat 576.714 kb on + strandat 576.804 kb on + strandat 576.900 kb on - strandat 576.910 kb on - strandat 577.038 kb on + strand, within MIT1002_00530at 577.038 kb on + strand, within MIT1002_00530at 577.069 kb on - strand, within MIT1002_00530at 577.070 kb on + strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.085 kb on - strand, within MIT1002_00530at 577.139 kb on - strand, within MIT1002_00530at 577.161 kb on - strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.195 kb on + strand, within MIT1002_00530at 577.200 kb on + strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.212 kb on + strand, within MIT1002_00530at 577.289 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.307 kb on - strand, within MIT1002_00530at 577.379 kb on + strandat 577.429 kb on + strandat 577.429 kb on + strandat 577.437 kb on - strandat 577.437 kb on - strandat 577.442 kb on - strandat 577.442 kb on - strandat 577.444 kb on - strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.596 kb on - strandat 577.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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574,906 + +0.2
574,909 - +2.3
574,955 - -1.7
575,041 - +1.2
575,041 - -0.3
575,058 + +3.7
575,060 + -0.2
575,066 - -1.1
575,117 - +4.2
575,213 - -0.8
575,263 - +1.4
575,266 + -0.7
575,275 - +3.2
575,276 + +1.2
575,337 - MIT1002_00528 0.16 +0.4
575,450 - MIT1002_00528 0.50 -0.8
575,452 - MIT1002_00528 0.50 +0.8
575,452 - MIT1002_00528 0.50 -1.9
575,463 + MIT1002_00528 0.53 +1.8
575,494 + MIT1002_00528 0.63 +1.8
575,508 - MIT1002_00528 0.67 -2.5
575,614 + +0.8
575,615 + +0.5
575,622 - +0.9
575,623 - +0.1
575,636 + -1.6
575,675 + -2.1
575,683 - -0.2
575,751 + +1.3
575,761 - -1.4
575,835 + -1.3
575,835 + -1.6
575,858 + -0.2
575,895 + +3.7
575,895 + -1.4
575,975 + -0.9
576,026 + MIT1002_00529 0.14 -0.1
576,094 + MIT1002_00529 0.22 +0.5
576,107 - MIT1002_00529 0.23 -0.4
576,172 - MIT1002_00529 0.31 +0.1
576,193 + MIT1002_00529 0.33 +2.3
576,201 - MIT1002_00529 0.34 +1.4
576,309 - MIT1002_00529 0.46 +1.5
576,344 + MIT1002_00529 0.50 +0.0
576,351 + MIT1002_00529 0.51 +1.1
576,358 - MIT1002_00529 0.52 +1.2
576,408 - MIT1002_00529 0.58 +0.1
576,457 + MIT1002_00529 0.63 -0.5
576,469 + MIT1002_00529 0.65 +1.0
576,537 + MIT1002_00529 0.73 +0.2
576,627 - MIT1002_00529 0.83 +0.6
576,639 + MIT1002_00529 0.84 -0.6
576,688 - +1.7
576,714 + +1.1
576,804 + +1.7
576,900 - -2.6
576,910 - +1.1
577,038 + MIT1002_00530 0.26 -0.5
577,038 + MIT1002_00530 0.26 +0.2
577,069 - MIT1002_00530 0.33 +0.6
577,070 + MIT1002_00530 0.33 -1.1
577,079 - MIT1002_00530 0.35 -0.2
577,079 - MIT1002_00530 0.35 +0.3
577,085 - MIT1002_00530 0.37 -0.3
577,139 - MIT1002_00530 0.49 -0.7
577,161 - MIT1002_00530 0.54 +0.1
577,166 + MIT1002_00530 0.55 -1.0
577,166 + MIT1002_00530 0.55 +0.3
577,174 - MIT1002_00530 0.57 -1.0
577,174 - MIT1002_00530 0.57 -1.9
577,174 - MIT1002_00530 0.57 +0.2
577,195 + MIT1002_00530 0.62 +1.3
577,200 + MIT1002_00530 0.63 +1.0
577,203 - MIT1002_00530 0.64 -1.0
577,203 - MIT1002_00530 0.64 -0.3
577,203 - MIT1002_00530 0.64 -0.7
577,205 + MIT1002_00530 0.65 -0.6
577,205 + MIT1002_00530 0.65 -0.1
577,205 + MIT1002_00530 0.65 -2.1
577,212 + MIT1002_00530 0.66 -0.3
577,289 + MIT1002_00530 0.84 -0.7
577,297 + MIT1002_00530 0.86 +0.4
577,297 + MIT1002_00530 0.86 +0.8
577,307 - MIT1002_00530 0.88 -0.9
577,379 + +1.3
577,429 + +0.4
577,429 + -2.3
577,437 - +0.0
577,437 - -0.4
577,442 - +3.9
577,442 - +0.5
577,444 - +1.7
577,588 + -0.2
577,588 + -0.6
577,588 + +0.4
577,596 - +0.3
577,710 + -0.2

Or see this region's nucleotide sequence