Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00459 and MIT1002_00460 are separated by 111 nucleotides MIT1002_00460 and MIT1002_00461 are separated by 437 nucleotides
MIT1002_00459: MIT1002_00459 - Transposase, at 503,413 to 504,609
_00459
MIT1002_00460: MIT1002_00460 - hypothetical protein, at 504,721 to 505,188
_00460
MIT1002_00461: MIT1002_00461 - Catalase, at 505,626 to 507,101
_00461
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 504.662 kb on + strand at 504.662 kb on + strand at 504.667 kb on - strand at 504.670 kb on - strand at 504.670 kb on - strand at 504.670 kb on - strand at 504.821 kb on - strand, within MIT1002_00460 at 504.887 kb on - strand, within MIT1002_00460 at 504.955 kb on - strand, within MIT1002_00460 at 504.995 kb on + strand, within MIT1002_00460 at 505.157 kb on - strand at 505.197 kb on - strand at 505.198 kb on + strand at 505.307 kb on - strand at 505.307 kb on - strand at 505.317 kb on - strand at 505.343 kb on + strand at 505.351 kb on - strand at 505.351 kb on - strand at 505.431 kb on - strand at 505.431 kb on - strand at 505.628 kb on + strand at 505.636 kb on - strand at 505.687 kb on + strand at 505.712 kb on + strand at 505.720 kb on - strand at 505.720 kb on - strand at 505.728 kb on - strand at 505.733 kb on - strand at 505.779 kb on + strand, within MIT1002_00461 at 505.779 kb on - strand, within MIT1002_00461 at 505.781 kb on + strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.817 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.857 kb on - strand, within MIT1002_00461 at 505.861 kb on - strand, within MIT1002_00461 at 505.861 kb on - strand, within MIT1002_00461 at 505.938 kb on - strand, within MIT1002_00461
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 504,662 + +0.7 504,662 + -0.2 504,667 - -1.1 504,670 - +0.2 504,670 - +0.6 504,670 - +0.5 504,821 - MIT1002_00460 0.21 -1.2 504,887 - MIT1002_00460 0.35 -0.4 504,955 - MIT1002_00460 0.50 -0.4 504,995 + MIT1002_00460 0.59 -0.9 505,157 - -2.3 505,197 - -0.1 505,198 + +0.9 505,307 - -0.4 505,307 - -1.0 505,317 - +1.1 505,343 + -0.8 505,351 - +0.3 505,351 - -0.5 505,431 - -0.3 505,431 - -0.2 505,628 + +0.9 505,636 - -0.3 505,687 + -0.7 505,712 + +0.0 505,720 - -0.5 505,720 - +1.7 505,728 - -2.0 505,733 - +0.5 505,779 + MIT1002_00461 0.10 -1.6 505,779 - MIT1002_00461 0.10 +1.7 505,781 + MIT1002_00461 0.11 -0.6 505,789 - MIT1002_00461 0.11 +0.4 505,789 - MIT1002_00461 0.11 +1.3 505,789 - MIT1002_00461 0.11 -0.9 505,789 - MIT1002_00461 0.11 +1.3 505,817 + MIT1002_00461 0.13 +0.5 505,828 + MIT1002_00461 0.14 +0.7 505,828 + MIT1002_00461 0.14 -0.7 505,828 + MIT1002_00461 0.14 +0.6 505,836 - MIT1002_00461 0.14 -0.4 505,836 - MIT1002_00461 0.14 -0.2 505,836 - MIT1002_00461 0.14 -0.3 505,857 - MIT1002_00461 0.16 -0.3 505,861 - MIT1002_00461 0.16 -0.8 505,861 - MIT1002_00461 0.16 +0.0 505,938 - MIT1002_00461 0.21 +1.0
Or see this region's nucleotide sequence