Experiment: monoculture; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00429 and MIT1002_00430 are separated by 35 nucleotides MIT1002_00430 and MIT1002_00431 are separated by 326 nucleotides
MIT1002_00429: MIT1002_00429 - Transposase, at 466,041 to 466,556
_00429
MIT1002_00430: MIT1002_00430 - Signal transduction histidine-protein kinase BarA, at 466,592 to 469,351
_00430
MIT1002_00431: MIT1002_00431 - DNA topoisomerase 4 subunit A, at 469,678 to 471,963
_00431
Position (kb) 466
467
468
469
470 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 466.702 kb on - strand at 466.725 kb on + strand at 466.770 kb on - strand at 466.816 kb on + strand at 466.865 kb on - strand at 467.032 kb on - strand, within MIT1002_00430 at 467.071 kb on + strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.092 kb on + strand, within MIT1002_00430 at 467.100 kb on - strand, within MIT1002_00430 at 467.137 kb on + strand, within MIT1002_00430 at 467.162 kb on + strand, within MIT1002_00430 at 467.250 kb on + strand, within MIT1002_00430 at 467.250 kb on + strand, within MIT1002_00430 at 467.299 kb on + strand, within MIT1002_00430 at 467.422 kb on - strand, within MIT1002_00430 at 467.475 kb on - strand, within MIT1002_00430 at 467.475 kb on - strand, within MIT1002_00430 at 467.486 kb on + strand, within MIT1002_00430 at 467.494 kb on - strand, within MIT1002_00430 at 467.494 kb on - strand, within MIT1002_00430 at 467.563 kb on + strand, within MIT1002_00430 at 467.918 kb on - strand, within MIT1002_00430 at 467.981 kb on + strand, within MIT1002_00430 at 468.007 kb on - strand, within MIT1002_00430 at 468.125 kb on + strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.481 kb on - strand, within MIT1002_00430 at 468.481 kb on - strand, within MIT1002_00430 at 468.763 kb on - strand, within MIT1002_00430 at 468.830 kb on + strand, within MIT1002_00430 at 468.868 kb on + strand, within MIT1002_00430 at 469.058 kb on + strand, within MIT1002_00430 at 469.059 kb on + strand, within MIT1002_00430 at 469.267 kb on + strand at 469.355 kb on + strand at 469.378 kb on + strand at 469.493 kb on - strand at 469.547 kb on + strand at 469.560 kb on + strand at 469.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5 remove 466,702 - +0.9 466,725 + +10.9 466,770 - +9.8 466,816 + +11.6 466,865 - +11.1 467,032 - MIT1002_00430 0.16 +7.0 467,071 + MIT1002_00430 0.17 +10.7 467,079 - MIT1002_00430 0.18 +6.2 467,079 - MIT1002_00430 0.18 +4.5 467,079 - MIT1002_00430 0.18 +5.9 467,092 + MIT1002_00430 0.18 +12.0 467,100 - MIT1002_00430 0.18 +6.4 467,137 + MIT1002_00430 0.20 +10.8 467,162 + MIT1002_00430 0.21 +6.8 467,250 + MIT1002_00430 0.24 +11.8 467,250 + MIT1002_00430 0.24 +10.5 467,299 + MIT1002_00430 0.26 +10.0 467,422 - MIT1002_00430 0.30 +0.4 467,475 - MIT1002_00430 0.32 +1.7 467,475 - MIT1002_00430 0.32 +2.1 467,486 + MIT1002_00430 0.32 +8.0 467,494 - MIT1002_00430 0.33 -1.2 467,494 - MIT1002_00430 0.33 +0.2 467,563 + MIT1002_00430 0.35 +8.4 467,918 - MIT1002_00430 0.48 +1.4 467,981 + MIT1002_00430 0.50 +8.5 468,007 - MIT1002_00430 0.51 +2.9 468,125 + MIT1002_00430 0.56 +10.0 468,362 - MIT1002_00430 0.64 +1.6 468,362 - MIT1002_00430 0.64 +4.9 468,362 - MIT1002_00430 0.64 +4.7 468,481 - MIT1002_00430 0.68 +5.1 468,481 - MIT1002_00430 0.68 +3.8 468,763 - MIT1002_00430 0.79 +3.7 468,830 + MIT1002_00430 0.81 +10.2 468,868 + MIT1002_00430 0.82 +10.3 469,058 + MIT1002_00430 0.89 +0.9 469,059 + MIT1002_00430 0.89 +9.7 469,267 + +10.7 469,355 + +2.2 469,378 + +0.5 469,493 - -0.1 469,547 + -1.1 469,560 + -0.3 469,580 + +1.2
Or see this region's nucleotide sequence