Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00412

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00409 and MIT1002_00410 are separated by 145 nucleotidesMIT1002_00410 and MIT1002_00411 are separated by 11 nucleotidesMIT1002_00411 and MIT1002_00412 are separated by 372 nucleotidesMIT1002_00412 and MIT1002_00413 are separated by 212 nucleotides MIT1002_00409: MIT1002_00409 - Murein polymerase, at 440,949 to 443,300 _00409 MIT1002_00410: MIT1002_00410 - hypothetical protein, at 443,446 to 443,556 _00410 MIT1002_00411: MIT1002_00411 - hypothetical protein, at 443,568 to 443,852 _00411 MIT1002_00412: MIT1002_00412 - Inner membrane protein YedI, at 444,225 to 445,148 _00412 MIT1002_00413: MIT1002_00413 - Extracellular ribonuclease precursor, at 445,361 to 447,001 _00413 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 443.241 kb on + strandat 443.350 kb on - strandat 443.356 kb on - strandat 443.472 kb on - strand, within MIT1002_00410at 443.506 kb on + strand, within MIT1002_00410at 443.541 kb on - strand, within MIT1002_00410at 443.582 kb on + strandat 443.590 kb on - strandat 443.614 kb on - strand, within MIT1002_00411at 443.707 kb on - strand, within MIT1002_00411at 443.719 kb on - strand, within MIT1002_00411at 443.794 kb on - strand, within MIT1002_00411at 443.799 kb on + strand, within MIT1002_00411at 443.810 kb on + strand, within MIT1002_00411at 443.825 kb on - strandat 443.877 kb on + strandat 443.883 kb on + strandat 443.905 kb on + strandat 443.965 kb on - strandat 444.145 kb on - strandat 444.186 kb on + strandat 444.205 kb on + strandat 444.207 kb on + strandat 444.213 kb on - strandat 444.230 kb on - strandat 444.304 kb on - strandat 444.401 kb on + strand, within MIT1002_00412at 444.440 kb on - strand, within MIT1002_00412at 444.456 kb on - strand, within MIT1002_00412at 444.480 kb on - strand, within MIT1002_00412at 444.482 kb on - strand, within MIT1002_00412at 444.510 kb on + strand, within MIT1002_00412at 444.528 kb on - strand, within MIT1002_00412at 444.545 kb on + strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.553 kb on - strand, within MIT1002_00412at 444.590 kb on + strand, within MIT1002_00412at 444.604 kb on - strand, within MIT1002_00412at 444.604 kb on - strand, within MIT1002_00412at 444.614 kb on + strand, within MIT1002_00412at 444.649 kb on + strand, within MIT1002_00412at 444.695 kb on + strand, within MIT1002_00412at 444.702 kb on - strand, within MIT1002_00412at 444.704 kb on - strand, within MIT1002_00412at 444.750 kb on + strand, within MIT1002_00412at 444.781 kb on - strand, within MIT1002_00412at 444.781 kb on - strand, within MIT1002_00412at 444.865 kb on - strand, within MIT1002_00412at 444.938 kb on - strand, within MIT1002_00412at 444.997 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.006 kb on + strand, within MIT1002_00412at 445.013 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.014 kb on - strand, within MIT1002_00412at 445.019 kb on - strand, within MIT1002_00412at 445.021 kb on + strand, within MIT1002_00412at 445.024 kb on - strand, within MIT1002_00412at 445.168 kb on + strandat 445.176 kb on - strandat 445.188 kb on - strandat 445.283 kb on + strandat 445.338 kb on + strandat 445.338 kb on + strandat 445.346 kb on + strandat 445.354 kb on - strandat 445.387 kb on + strandat 445.408 kb on + strandat 445.470 kb on - strandat 445.520 kb on + strandat 445.538 kb on + strand, within MIT1002_00413at 445.538 kb on + strand, within MIT1002_00413at 445.538 kb on + strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.546 kb on - strand, within MIT1002_00413at 445.635 kb on + strand, within MIT1002_00413at 445.643 kb on - strand, within MIT1002_00413at 445.643 kb on - strand, within MIT1002_00413at 445.702 kb on + strand, within MIT1002_00413at 445.740 kb on + strand, within MIT1002_00413at 445.744 kb on + strand, within MIT1002_00413at 445.778 kb on - strand, within MIT1002_00413at 445.807 kb on + strand, within MIT1002_00413at 445.812 kb on + strand, within MIT1002_00413at 445.885 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.906 kb on + strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.914 kb on - strand, within MIT1002_00413at 445.920 kb on + strand, within MIT1002_00413at 445.925 kb on + strand, within MIT1002_00413at 445.941 kb on - strand, within MIT1002_00413at 446.022 kb on + strand, within MIT1002_00413at 446.030 kb on - strand, within MIT1002_00413at 446.093 kb on + strand, within MIT1002_00413at 446.101 kb on - strand, within MIT1002_00413at 446.102 kb on + strand, within MIT1002_00413at 446.105 kb on - strand, within MIT1002_00413at 446.110 kb on + strand, within MIT1002_00413at 446.120 kb on - strand, within MIT1002_00413

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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443,241 + -1.1
443,350 - +0.6
443,356 - +1.4
443,472 - MIT1002_00410 0.23 +0.2
443,506 + MIT1002_00410 0.54 +0.0
443,541 - MIT1002_00410 0.86 +1.4
443,582 + +0.2
443,590 - +1.1
443,614 - MIT1002_00411 0.16 -1.0
443,707 - MIT1002_00411 0.49 -2.0
443,719 - MIT1002_00411 0.53 +1.9
443,794 - MIT1002_00411 0.79 -0.3
443,799 + MIT1002_00411 0.81 +0.7
443,810 + MIT1002_00411 0.85 +1.6
443,825 - -1.9
443,877 + +0.2
443,883 + +0.2
443,905 + -3.2
443,965 - -0.9
444,145 - +0.5
444,186 + +2.0
444,205 + +0.5
444,207 + -0.7
444,213 - -0.4
444,230 - -1.5
444,304 - -0.3
444,401 + MIT1002_00412 0.19 +1.3
444,440 - MIT1002_00412 0.23 +0.7
444,456 - MIT1002_00412 0.25 -0.1
444,480 - MIT1002_00412 0.28 -2.7
444,482 - MIT1002_00412 0.28 +0.2
444,510 + MIT1002_00412 0.31 +0.4
444,528 - MIT1002_00412 0.33 +0.7
444,545 + MIT1002_00412 0.35 -1.4
444,553 - MIT1002_00412 0.35 +2.1
444,553 - MIT1002_00412 0.35 -1.5
444,553 - MIT1002_00412 0.35 +0.5
444,590 + MIT1002_00412 0.40 +0.3
444,604 - MIT1002_00412 0.41 -1.2
444,604 - MIT1002_00412 0.41 +1.1
444,614 + MIT1002_00412 0.42 -0.6
444,649 + MIT1002_00412 0.46 +0.3
444,695 + MIT1002_00412 0.51 -0.0
444,702 - MIT1002_00412 0.52 +0.7
444,704 - MIT1002_00412 0.52 -1.0
444,750 + MIT1002_00412 0.57 -0.9
444,781 - MIT1002_00412 0.60 +0.4
444,781 - MIT1002_00412 0.60 -1.0
444,865 - MIT1002_00412 0.69 +0.5
444,938 - MIT1002_00412 0.77 +0.2
444,997 + MIT1002_00412 0.84 -1.1
445,006 + MIT1002_00412 0.85 -1.3
445,006 + MIT1002_00412 0.85 -1.0
445,006 + MIT1002_00412 0.85 -0.9
445,006 + MIT1002_00412 0.85 -1.0
445,006 + MIT1002_00412 0.85 -0.4
445,013 - MIT1002_00412 0.85 +1.0
445,014 - MIT1002_00412 0.85 -0.0
445,014 - MIT1002_00412 0.85 -0.1
445,014 - MIT1002_00412 0.85 -0.3
445,014 - MIT1002_00412 0.85 +0.1
445,019 - MIT1002_00412 0.86 +0.5
445,021 + MIT1002_00412 0.86 +1.7
445,024 - MIT1002_00412 0.86 -1.0
445,168 + +0.1
445,176 - +0.4
445,188 - -0.3
445,283 + +0.2
445,338 + -0.2
445,338 + -1.4
445,346 + -0.5
445,354 - +1.1
445,387 + -0.5
445,408 + +0.4
445,470 - -0.6
445,520 + +1.6
445,538 + MIT1002_00413 0.11 -0.1
445,538 + MIT1002_00413 0.11 +1.8
445,538 + MIT1002_00413 0.11 +1.6
445,546 - MIT1002_00413 0.11 -1.3
445,546 - MIT1002_00413 0.11 -1.8
445,546 - MIT1002_00413 0.11 -0.3
445,635 + MIT1002_00413 0.17 +0.6
445,643 - MIT1002_00413 0.17 -0.0
445,643 - MIT1002_00413 0.17 +0.2
445,702 + MIT1002_00413 0.21 +1.4
445,740 + MIT1002_00413 0.23 +3.7
445,744 + MIT1002_00413 0.23 +0.7
445,778 - MIT1002_00413 0.25 +0.1
445,807 + MIT1002_00413 0.27 -0.7
445,812 + MIT1002_00413 0.27 -1.0
445,885 + MIT1002_00413 0.32 -0.2
445,906 + MIT1002_00413 0.33 +0.9
445,906 + MIT1002_00413 0.33 -1.2
445,906 + MIT1002_00413 0.33 -2.1
445,906 + MIT1002_00413 0.33 +1.4
445,906 + MIT1002_00413 0.33 -1.3
445,906 + MIT1002_00413 0.33 +0.9
445,906 + MIT1002_00413 0.33 +1.0
445,914 - MIT1002_00413 0.34 -0.5
445,914 - MIT1002_00413 0.34 -0.0
445,914 - MIT1002_00413 0.34 -0.4
445,914 - MIT1002_00413 0.34 -0.2
445,914 - MIT1002_00413 0.34 +1.6
445,914 - MIT1002_00413 0.34 +0.4
445,914 - MIT1002_00413 0.34 +0.0
445,914 - MIT1002_00413 0.34 -0.0
445,914 - MIT1002_00413 0.34 -0.0
445,914 - MIT1002_00413 0.34 -1.2
445,914 - MIT1002_00413 0.34 +1.7
445,914 - MIT1002_00413 0.34 -0.7
445,920 + MIT1002_00413 0.34 +0.1
445,925 + MIT1002_00413 0.34 +0.4
445,941 - MIT1002_00413 0.35 +1.1
446,022 + MIT1002_00413 0.40 -2.8
446,030 - MIT1002_00413 0.41 +0.7
446,093 + MIT1002_00413 0.45 +0.1
446,101 - MIT1002_00413 0.45 +1.2
446,102 + MIT1002_00413 0.45 -1.3
446,105 - MIT1002_00413 0.45 +0.1
446,110 + MIT1002_00413 0.46 -0.1
446,120 - MIT1002_00413 0.46 -1.6

Or see this region's nucleotide sequence