Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00218

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00216 and MIT1002_00217 overlap by 1 nucleotidesMIT1002_00217 and MIT1002_00218 overlap by 11 nucleotidesMIT1002_00218 and MIT1002_00219 overlap by 1 nucleotides MIT1002_00216: MIT1002_00216 - Tfp pilus assembly protein PilV, at 238,002 to 238,523 _00216 MIT1002_00217: MIT1002_00217 - hypothetical protein, at 238,523 to 239,266 _00217 MIT1002_00218: MIT1002_00218 - hypothetical protein, at 239,256 to 239,747 _00218 MIT1002_00219: MIT1002_00219 - H-type lectin domain protein, at 239,747 to 243,445 _00219 Position (kb) 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 238.261 kb on - strand, within MIT1002_00216at 238.288 kb on + strand, within MIT1002_00216at 238.311 kb on + strand, within MIT1002_00216at 238.337 kb on + strand, within MIT1002_00216at 238.339 kb on + strand, within MIT1002_00216at 238.410 kb on + strand, within MIT1002_00216at 238.419 kb on - strand, within MIT1002_00216at 238.426 kb on - strand, within MIT1002_00216at 238.460 kb on - strand, within MIT1002_00216at 238.471 kb on + strandat 238.504 kb on - strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.554 kb on + strandat 238.560 kb on + strandat 238.669 kb on - strand, within MIT1002_00217at 238.720 kb on + strand, within MIT1002_00217at 238.728 kb on - strand, within MIT1002_00217at 238.730 kb on + strand, within MIT1002_00217at 238.745 kb on - strand, within MIT1002_00217at 238.757 kb on + strand, within MIT1002_00217at 238.801 kb on - strand, within MIT1002_00217at 238.833 kb on + strand, within MIT1002_00217at 238.833 kb on - strand, within MIT1002_00217at 238.841 kb on + strand, within MIT1002_00217at 238.872 kb on + strand, within MIT1002_00217at 238.985 kb on - strand, within MIT1002_00217at 238.993 kb on + strand, within MIT1002_00217at 239.069 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.100 kb on + strand, within MIT1002_00217at 239.108 kb on - strand, within MIT1002_00217at 239.132 kb on + strand, within MIT1002_00217at 239.142 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.157 kb on + strand, within MIT1002_00217at 239.165 kb on - strand, within MIT1002_00217at 239.258 kb on - strandat 239.301 kb on - strandat 239.408 kb on - strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.447 kb on + strand, within MIT1002_00218at 239.470 kb on - strand, within MIT1002_00218at 239.510 kb on + strand, within MIT1002_00218at 239.556 kb on + strand, within MIT1002_00218at 239.564 kb on - strand, within MIT1002_00218at 239.592 kb on + strand, within MIT1002_00218at 239.600 kb on - strand, within MIT1002_00218at 239.650 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.684 kb on + strand, within MIT1002_00218at 239.689 kb on + strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.692 kb on - strand, within MIT1002_00218at 239.697 kb on - strand, within MIT1002_00218at 239.805 kb on + strandat 239.813 kb on + strandat 239.841 kb on + strandat 239.866 kb on + strandat 239.866 kb on + strandat 239.932 kb on - strandat 239.942 kb on + strandat 239.979 kb on + strandat 240.002 kb on + strandat 240.010 kb on + strandat 240.017 kb on - strandat 240.018 kb on - strandat 240.024 kb on - strandat 240.059 kb on - strandat 240.115 kb on + strandat 240.186 kb on + strand, within MIT1002_00219at 240.358 kb on + strand, within MIT1002_00219at 240.358 kb on + strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.366 kb on - strand, within MIT1002_00219at 240.370 kb on + strand, within MIT1002_00219at 240.444 kb on - strand, within MIT1002_00219at 240.484 kb on + strand, within MIT1002_00219at 240.497 kb on - strand, within MIT1002_00219at 240.497 kb on - strand, within MIT1002_00219at 240.527 kb on + strand, within MIT1002_00219at 240.527 kb on + strand, within MIT1002_00219at 240.543 kb on - strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.669 kb on + strand, within MIT1002_00219at 240.677 kb on - strand, within MIT1002_00219at 240.691 kb on + strand, within MIT1002_00219at 240.715 kb on + strand, within MIT1002_00219at 240.715 kb on + strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.723 kb on - strand, within MIT1002_00219at 240.725 kb on + strand, within MIT1002_00219

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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238,261 - MIT1002_00216 0.50 -0.6
238,288 + MIT1002_00216 0.55 +1.3
238,311 + MIT1002_00216 0.59 -0.2
238,337 + MIT1002_00216 0.64 -2.9
238,339 + MIT1002_00216 0.65 +1.0
238,410 + MIT1002_00216 0.78 +0.5
238,419 - MIT1002_00216 0.80 -0.8
238,426 - MIT1002_00216 0.81 -0.5
238,460 - MIT1002_00216 0.88 +1.0
238,471 + -0.6
238,504 - +3.3
238,554 + +1.0
238,554 + -0.4
238,554 + -1.5
238,554 + +0.1
238,560 + -0.2
238,669 - MIT1002_00217 0.20 -1.5
238,720 + MIT1002_00217 0.26 -1.0
238,728 - MIT1002_00217 0.28 -1.2
238,730 + MIT1002_00217 0.28 +0.8
238,745 - MIT1002_00217 0.30 +0.1
238,757 + MIT1002_00217 0.31 -0.4
238,801 - MIT1002_00217 0.37 +1.1
238,833 + MIT1002_00217 0.42 +0.5
238,833 - MIT1002_00217 0.42 +1.0
238,841 + MIT1002_00217 0.43 +1.2
238,872 + MIT1002_00217 0.47 +0.3
238,985 - MIT1002_00217 0.62 -0.1
238,993 + MIT1002_00217 0.63 -0.8
239,069 + MIT1002_00217 0.73 -1.0
239,100 + MIT1002_00217 0.78 -0.6
239,100 + MIT1002_00217 0.78 -0.1
239,100 + MIT1002_00217 0.78 -1.3
239,100 + MIT1002_00217 0.78 -0.4
239,108 - MIT1002_00217 0.79 +0.6
239,132 + MIT1002_00217 0.82 +1.7
239,142 + MIT1002_00217 0.83 +0.7
239,157 + MIT1002_00217 0.85 +0.2
239,157 + MIT1002_00217 0.85 -0.0
239,157 + MIT1002_00217 0.85 +1.5
239,157 + MIT1002_00217 0.85 -0.2
239,165 - MIT1002_00217 0.86 -0.8
239,258 - -0.2
239,301 - +1.2
239,408 - MIT1002_00218 0.31 +0.8
239,447 + MIT1002_00218 0.39 +1.5
239,447 + MIT1002_00218 0.39 +0.8
239,470 - MIT1002_00218 0.43 +0.5
239,510 + MIT1002_00218 0.52 -0.9
239,556 + MIT1002_00218 0.61 +0.0
239,564 - MIT1002_00218 0.63 +0.3
239,592 + MIT1002_00218 0.68 -0.5
239,600 - MIT1002_00218 0.70 -0.4
239,650 + MIT1002_00218 0.80 +1.9
239,684 + MIT1002_00218 0.87 +0.2
239,684 + MIT1002_00218 0.87 -1.3
239,689 + MIT1002_00218 0.88 -0.5
239,692 - MIT1002_00218 0.89 -0.7
239,692 - MIT1002_00218 0.89 -0.6
239,692 - MIT1002_00218 0.89 +0.3
239,697 - MIT1002_00218 0.90 -0.7
239,805 + -0.1
239,813 + -1.9
239,841 + +2.3
239,866 + -0.2
239,866 + +1.9
239,932 - -1.2
239,942 + -0.7
239,979 + +1.5
240,002 + -0.1
240,010 + -0.1
240,017 - +0.3
240,018 - +0.3
240,024 - +0.7
240,059 - +1.8
240,115 + +1.9
240,186 + MIT1002_00219 0.12 -0.2
240,358 + MIT1002_00219 0.17 +2.0
240,358 + MIT1002_00219 0.17 +0.2
240,366 - MIT1002_00219 0.17 +1.5
240,366 - MIT1002_00219 0.17 +0.9
240,366 - MIT1002_00219 0.17 +1.1
240,366 - MIT1002_00219 0.17 +1.3
240,370 + MIT1002_00219 0.17 -0.0
240,444 - MIT1002_00219 0.19 +0.6
240,484 + MIT1002_00219 0.20 +0.3
240,497 - MIT1002_00219 0.20 -0.1
240,497 - MIT1002_00219 0.20 +1.7
240,527 + MIT1002_00219 0.21 +0.1
240,527 + MIT1002_00219 0.21 -1.7
240,543 - MIT1002_00219 0.22 +0.3
240,669 + MIT1002_00219 0.25 -0.2
240,669 + MIT1002_00219 0.25 -0.2
240,669 + MIT1002_00219 0.25 +2.1
240,677 - MIT1002_00219 0.25 +1.1
240,691 + MIT1002_00219 0.26 +0.1
240,715 + MIT1002_00219 0.26 -0.6
240,715 + MIT1002_00219 0.26 +0.0
240,723 - MIT1002_00219 0.26 -2.1
240,723 - MIT1002_00219 0.26 -1.0
240,723 - MIT1002_00219 0.26 +1.9
240,725 + MIT1002_00219 0.26 +1.0

Or see this region's nucleotide sequence