Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00060

Experiment: monoculture; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00059 and MIT1002_00060 are separated by 488 nucleotidesMIT1002_00060 and MIT1002_00061 overlap by 4 nucleotides MIT1002_00059: MIT1002_00059 - 3-deoxy-D-manno-octulosonic acid kinase, at 63,379 to 64,101 _00059 MIT1002_00060: MIT1002_00060 - hypothetical protein, at 64,590 to 65,063 _00060 MIT1002_00061: MIT1002_00061 - hypothetical protein, at 65,060 to 66,235 _00061 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2 3at 64.084 kb on - strandat 64.113 kb on - strandat 64.399 kb on - strandat 64.419 kb on - strandat 64.580 kb on - strandat 64.671 kb on - strand, within MIT1002_00060at 64.673 kb on + strand, within MIT1002_00060at 64.681 kb on - strand, within MIT1002_00060at 64.702 kb on - strand, within MIT1002_00060at 64.707 kb on - strand, within MIT1002_00060at 64.719 kb on + strand, within MIT1002_00060at 64.727 kb on - strand, within MIT1002_00060at 64.751 kb on - strand, within MIT1002_00060at 64.790 kb on + strand, within MIT1002_00060at 64.793 kb on - strand, within MIT1002_00060at 64.880 kb on - strand, within MIT1002_00060at 64.921 kb on + strand, within MIT1002_00060at 64.921 kb on + strand, within MIT1002_00060at 64.921 kb on + strand, within MIT1002_00060at 64.929 kb on - strand, within MIT1002_00060at 64.929 kb on - strand, within MIT1002_00060at 64.933 kb on + strand, within MIT1002_00060at 64.934 kb on - strand, within MIT1002_00060at 64.965 kb on + strand, within MIT1002_00060at 64.965 kb on + strand, within MIT1002_00060at 65.008 kb on + strand, within MIT1002_00060at 65.016 kb on - strandat 65.016 kb on - strandat 65.048 kb on + strandat 65.056 kb on - strandat 65.056 kb on - strandat 65.100 kb on + strandat 65.105 kb on + strandat 65.146 kb on + strandat 65.146 kb on + strandat 65.162 kb on - strandat 65.164 kb on + strandat 65.179 kb on + strand, within MIT1002_00061at 65.194 kb on - strand, within MIT1002_00061at 65.215 kb on + strand, within MIT1002_00061at 65.235 kb on - strand, within MIT1002_00061at 65.313 kb on + strand, within MIT1002_00061at 65.318 kb on + strand, within MIT1002_00061at 65.324 kb on + strand, within MIT1002_00061at 65.357 kb on - strand, within MIT1002_00061at 65.375 kb on + strand, within MIT1002_00061at 65.427 kb on + strand, within MIT1002_00061at 65.459 kb on + strand, within MIT1002_00061at 65.462 kb on - strand, within MIT1002_00061at 65.509 kb on - strand, within MIT1002_00061at 65.529 kb on + strand, within MIT1002_00061at 65.539 kb on + strand, within MIT1002_00061at 65.544 kb on - strand, within MIT1002_00061at 65.549 kb on - strand, within MIT1002_00061at 65.638 kb on - strand, within MIT1002_00061at 65.732 kb on - strand, within MIT1002_00061at 65.790 kb on + strand, within MIT1002_00061at 65.798 kb on - strand, within MIT1002_00061at 65.798 kb on - strand, within MIT1002_00061at 65.852 kb on - strand, within MIT1002_00061at 65.853 kb on - strand, within MIT1002_00061at 65.853 kb on - strand, within MIT1002_00061at 65.863 kb on - strand, within MIT1002_00061at 65.870 kb on + strand, within MIT1002_00061at 65.870 kb on + strand, within MIT1002_00061at 65.885 kb on + strand, within MIT1002_00061at 65.916 kb on + strand, within MIT1002_00061at 65.974 kb on - strand, within MIT1002_00061at 66.005 kb on + strand, within MIT1002_00061

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 5
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64,084 - -0.4
64,113 - +2.7
64,399 - +0.3
64,419 - +0.5
64,580 - +0.2
64,671 - MIT1002_00060 0.17 +0.2
64,673 + MIT1002_00060 0.18 -2.0
64,681 - MIT1002_00060 0.19 -0.7
64,702 - MIT1002_00060 0.24 +1.7
64,707 - MIT1002_00060 0.25 +0.6
64,719 + MIT1002_00060 0.27 +0.8
64,727 - MIT1002_00060 0.29 -1.5
64,751 - MIT1002_00060 0.34 -1.0
64,790 + MIT1002_00060 0.42 -0.0
64,793 - MIT1002_00060 0.43 -0.1
64,880 - MIT1002_00060 0.61 -1.4
64,921 + MIT1002_00060 0.70 -0.1
64,921 + MIT1002_00060 0.70 -1.3
64,921 + MIT1002_00060 0.70 +3.1
64,929 - MIT1002_00060 0.72 -0.3
64,929 - MIT1002_00060 0.72 +2.1
64,933 + MIT1002_00060 0.72 +0.4
64,934 - MIT1002_00060 0.73 -0.8
64,965 + MIT1002_00060 0.79 -0.4
64,965 + MIT1002_00060 0.79 -1.2
65,008 + MIT1002_00060 0.88 +1.4
65,016 - +2.2
65,016 - -1.7
65,048 + -0.6
65,056 - -1.3
65,056 - +0.2
65,100 + +1.1
65,105 + +0.7
65,146 + +1.1
65,146 + +0.8
65,162 - -0.8
65,164 + +0.3
65,179 + MIT1002_00061 0.10 -0.3
65,194 - MIT1002_00061 0.11 +0.7
65,215 + MIT1002_00061 0.13 +0.6
65,235 - MIT1002_00061 0.15 +2.0
65,313 + MIT1002_00061 0.22 +1.7
65,318 + MIT1002_00061 0.22 +0.4
65,324 + MIT1002_00061 0.22 -1.6
65,357 - MIT1002_00061 0.25 -0.9
65,375 + MIT1002_00061 0.27 +2.3
65,427 + MIT1002_00061 0.31 -0.8
65,459 + MIT1002_00061 0.34 +0.4
65,462 - MIT1002_00061 0.34 +0.5
65,509 - MIT1002_00061 0.38 -0.5
65,529 + MIT1002_00061 0.40 +1.3
65,539 + MIT1002_00061 0.41 +0.7
65,544 - MIT1002_00061 0.41 -2.4
65,549 - MIT1002_00061 0.42 -0.6
65,638 - MIT1002_00061 0.49 +2.1
65,732 - MIT1002_00061 0.57 +0.5
65,790 + MIT1002_00061 0.62 +0.7
65,798 - MIT1002_00061 0.63 +3.7
65,798 - MIT1002_00061 0.63 +2.8
65,852 - MIT1002_00061 0.67 +1.2
65,853 - MIT1002_00061 0.67 -0.1
65,853 - MIT1002_00061 0.67 -1.0
65,863 - MIT1002_00061 0.68 +0.2
65,870 + MIT1002_00061 0.69 +0.7
65,870 + MIT1002_00061 0.69 -1.0
65,885 + MIT1002_00061 0.70 +0.0
65,916 + MIT1002_00061 0.73 +0.8
65,974 - MIT1002_00061 0.78 -0.7
66,005 + MIT1002_00061 0.80 +0.1

Or see this region's nucleotide sequence