Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36615 and QEN71_RS36620 are separated by 150 nucleotides QEN71_RS36620 and QEN71_RS36625 are separated by 226 nucleotides QEN71_RS36625 and QEN71_RS36630 are separated by 342 nucleotides
QEN71_RS36615: QEN71_RS36615 - MFS transporter, at 1,599,195 to 1,600,565
_RS36615
QEN71_RS36620: QEN71_RS36620 - LysR family transcriptional regulator, at 1,600,716 to 1,601,672
_RS36620
QEN71_RS36625: QEN71_RS36625 - hypothetical protein, at 1,601,899 to 1,602,168
_RS36625
QEN71_RS36630: QEN71_RS36630 - LLM class flavin-dependent oxidoreductase, at 1,602,511 to 1,603,851
_RS36630
Position (kb)
1600
1601
1602 Strain fitness (log2 ratio)
-2
-1
0
1 at 1599.746 kb on - strand, within QEN71_RS36615 at 1599.773 kb on - strand, within QEN71_RS36615 at 1599.773 kb on - strand, within QEN71_RS36615 at 1599.912 kb on - strand, within QEN71_RS36615 at 1599.925 kb on + strand, within QEN71_RS36615 at 1599.925 kb on + strand, within QEN71_RS36615 at 1599.925 kb on + strand, within QEN71_RS36615 at 1599.926 kb on - strand, within QEN71_RS36615 at 1600.178 kb on + strand, within QEN71_RS36615 at 1600.217 kb on - strand, within QEN71_RS36615 at 1600.306 kb on + strand, within QEN71_RS36615 at 1600.422 kb on + strand, within QEN71_RS36615 at 1600.442 kb on + strand at 1600.443 kb on - strand at 1600.578 kb on - strand at 1600.579 kb on + strand at 1600.580 kb on - strand at 1600.661 kb on - strand at 1600.717 kb on + strand at 1600.836 kb on + strand, within QEN71_RS36620 at 1601.180 kb on - strand, within QEN71_RS36620 at 1601.495 kb on - strand, within QEN71_RS36620 at 1601.497 kb on + strand, within QEN71_RS36620 at 1601.498 kb on - strand, within QEN71_RS36620 at 1601.724 kb on + strand at 1601.725 kb on - strand at 1601.824 kb on + strand at 1601.912 kb on + strand at 1601.926 kb on - strand, within QEN71_RS36625 at 1602.433 kb on + strand at 1602.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 1,599,746 - QEN71_RS36615 0.40 -2.0 1,599,773 - QEN71_RS36615 0.42 -0.0 1,599,773 - QEN71_RS36615 0.42 +0.3 1,599,912 - QEN71_RS36615 0.52 +1.1 1,599,925 + QEN71_RS36615 0.53 -0.0 1,599,925 + QEN71_RS36615 0.53 +0.9 1,599,925 + QEN71_RS36615 0.53 -0.9 1,599,926 - QEN71_RS36615 0.53 +0.3 1,600,178 + QEN71_RS36615 0.72 -0.8 1,600,217 - QEN71_RS36615 0.75 +0.4 1,600,306 + QEN71_RS36615 0.81 -1.2 1,600,422 + QEN71_RS36615 0.89 -1.4 1,600,442 + -0.1 1,600,443 - +0.5 1,600,578 - -0.6 1,600,579 + -1.6 1,600,580 - +0.1 1,600,661 - -0.5 1,600,717 + -0.4 1,600,836 + QEN71_RS36620 0.13 +1.3 1,601,180 - QEN71_RS36620 0.48 +0.1 1,601,495 - QEN71_RS36620 0.81 -0.2 1,601,497 + QEN71_RS36620 0.82 -0.2 1,601,498 - QEN71_RS36620 0.82 +0.4 1,601,724 + +0.4 1,601,725 - +0.2 1,601,824 + -2.4 1,601,912 + -0.7 1,601,926 - QEN71_RS36625 0.10 -0.4 1,602,433 + +1.1 1,602,438 + -0.2
Or see this region's nucleotide sequence