Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32005 and QEN71_RS32010 are separated by 129 nucleotides QEN71_RS32010 and QEN71_RS32015 overlap by 7 nucleotides QEN71_RS32015 and QEN71_RS32020 are separated by 44 nucleotides
QEN71_RS32005: QEN71_RS32005 - tartrate dehydrogenase, at 531,664 to 532,743
_RS32005
QEN71_RS32010: QEN71_RS32010 - LysR substrate-binding domain-containing protein, at 532,873 to 533,790
_RS32010
QEN71_RS32015: QEN71_RS32015 - winged helix-turn-helix transcriptional regulator, at 533,784 to 534,281
_RS32015
QEN71_RS32020: QEN71_RS32020 - aspartate aminotransferase family protein, at 534,326 to 535,735
_RS32020
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.235 kb on - strand, within QEN71_RS32005 at 532.437 kb on - strand, within QEN71_RS32005 at 532.437 kb on - strand, within QEN71_RS32005 at 532.437 kb on - strand, within QEN71_RS32005 at 532.437 kb on - strand, within QEN71_RS32005 at 532.592 kb on + strand, within QEN71_RS32005 at 532.592 kb on + strand, within QEN71_RS32005 at 532.595 kb on + strand, within QEN71_RS32005 at 532.595 kb on + strand, within QEN71_RS32005 at 532.596 kb on - strand, within QEN71_RS32005 at 532.625 kb on + strand, within QEN71_RS32005 at 532.643 kb on + strand at 532.695 kb on + strand at 532.731 kb on - strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.811 kb on + strand at 532.816 kb on + strand at 532.816 kb on + strand at 532.816 kb on + strand at 532.816 kb on + strand at 532.817 kb on - strand at 532.817 kb on - strand at 532.817 kb on - strand at 532.836 kb on - strand at 532.862 kb on - strand at 532.976 kb on - strand, within QEN71_RS32010 at 532.976 kb on - strand, within QEN71_RS32010 at 533.129 kb on + strand, within QEN71_RS32010 at 533.129 kb on + strand, within QEN71_RS32010 at 533.130 kb on - strand, within QEN71_RS32010 at 533.130 kb on - strand, within QEN71_RS32010 at 533.196 kb on + strand, within QEN71_RS32010 at 533.197 kb on - strand, within QEN71_RS32010 at 533.392 kb on + strand, within QEN71_RS32010 at 533.393 kb on - strand, within QEN71_RS32010 at 533.393 kb on - strand, within QEN71_RS32010 at 533.664 kb on + strand, within QEN71_RS32010 at 533.665 kb on - strand, within QEN71_RS32010 at 533.857 kb on + strand, within QEN71_RS32015 at 533.858 kb on - strand, within QEN71_RS32015 at 533.858 kb on - strand, within QEN71_RS32015 at 533.866 kb on + strand, within QEN71_RS32015 at 533.917 kb on + strand, within QEN71_RS32015 at 533.917 kb on + strand, within QEN71_RS32015 at 534.125 kb on + strand, within QEN71_RS32015 at 534.125 kb on + strand, within QEN71_RS32015 at 534.125 kb on + strand, within QEN71_RS32015 at 534.126 kb on - strand, within QEN71_RS32015 at 534.126 kb on - strand, within QEN71_RS32015 at 534.126 kb on - strand, within QEN71_RS32015 at 534.126 kb on - strand, within QEN71_RS32015 at 534.126 kb on - strand, within QEN71_RS32015 at 534.127 kb on + strand, within QEN71_RS32015 at 534.127 kb on + strand, within QEN71_RS32015 at 534.324 kb on + strand at 534.324 kb on + strand at 534.324 kb on + strand at 534.520 kb on - strand, within QEN71_RS32020 at 534.723 kb on + strand, within QEN71_RS32020 at 534.775 kb on - strand, within QEN71_RS32020
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 532,235 - QEN71_RS32005 0.53 +1.7 532,437 - QEN71_RS32005 0.72 -1.1 532,437 - QEN71_RS32005 0.72 -0.8 532,437 - QEN71_RS32005 0.72 +1.1 532,437 - QEN71_RS32005 0.72 -1.9 532,592 + QEN71_RS32005 0.86 -0.4 532,592 + QEN71_RS32005 0.86 -0.2 532,595 + QEN71_RS32005 0.86 +0.2 532,595 + QEN71_RS32005 0.86 -0.4 532,596 - QEN71_RS32005 0.86 -2.9 532,625 + QEN71_RS32005 0.89 -2.1 532,643 + +1.8 532,695 + -0.9 532,731 - +0.9 532,804 + -0.1 532,804 + +0.1 532,804 + -1.6 532,811 + -1.9 532,816 + -0.5 532,816 + -0.4 532,816 + -0.2 532,816 + -0.1 532,817 - -0.7 532,817 - +0.1 532,817 - -0.2 532,836 - -2.4 532,862 - -1.1 532,976 - QEN71_RS32010 0.11 -0.2 532,976 - QEN71_RS32010 0.11 -0.2 533,129 + QEN71_RS32010 0.28 +0.5 533,129 + QEN71_RS32010 0.28 -0.5 533,130 - QEN71_RS32010 0.28 +0.5 533,130 - QEN71_RS32010 0.28 +0.2 533,196 + QEN71_RS32010 0.35 -0.8 533,197 - QEN71_RS32010 0.35 -0.7 533,392 + QEN71_RS32010 0.57 -1.9 533,393 - QEN71_RS32010 0.57 -1.1 533,393 - QEN71_RS32010 0.57 -1.1 533,664 + QEN71_RS32010 0.86 -0.8 533,665 - QEN71_RS32010 0.86 -1.9 533,857 + QEN71_RS32015 0.15 -0.0 533,858 - QEN71_RS32015 0.15 -0.7 533,858 - QEN71_RS32015 0.15 +0.1 533,866 + QEN71_RS32015 0.16 -0.1 533,917 + QEN71_RS32015 0.27 -0.5 533,917 + QEN71_RS32015 0.27 -0.9 534,125 + QEN71_RS32015 0.68 -1.6 534,125 + QEN71_RS32015 0.68 +0.1 534,125 + QEN71_RS32015 0.68 +0.3 534,126 - QEN71_RS32015 0.69 +0.7 534,126 - QEN71_RS32015 0.69 -0.8 534,126 - QEN71_RS32015 0.69 -0.1 534,126 - QEN71_RS32015 0.69 +2.1 534,126 - QEN71_RS32015 0.69 -0.8 534,127 + QEN71_RS32015 0.69 +1.3 534,127 + QEN71_RS32015 0.69 -0.0 534,324 + +0.0 534,324 + -0.1 534,324 + -1.8 534,520 - QEN71_RS32020 0.14 -1.2 534,723 + QEN71_RS32020 0.28 +0.1 534,775 - QEN71_RS32020 0.32 -0.6
Or see this region's nucleotide sequence