Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22230 and QEN71_RS22235 are separated by 653 nucleotides QEN71_RS22235 and QEN71_RS22240 are separated by 6 nucleotides
QEN71_RS22230: QEN71_RS22230 - endonuclease/exonuclease/phosphatase family protein, at 4,935,793 to 4,936,656
_RS22230
QEN71_RS22235: QEN71_RS22235 - 3'-5' exonuclease, at 4,937,310 to 4,938,086
_RS22235
QEN71_RS22240: QEN71_RS22240 - RNA polymerase sigma factor RpoS, at 4,938,093 to 4,939,187
_RS22240
Position (kb) 4937
4938
4939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4936.396 kb on + strand, within QEN71_RS22230 at 4936.396 kb on + strand, within QEN71_RS22230 at 4936.396 kb on + strand, within QEN71_RS22230 at 4936.396 kb on + strand, within QEN71_RS22230 at 4936.397 kb on - strand, within QEN71_RS22230 at 4936.397 kb on - strand, within QEN71_RS22230 at 4936.494 kb on + strand, within QEN71_RS22230 at 4936.494 kb on + strand, within QEN71_RS22230 at 4936.495 kb on - strand, within QEN71_RS22230 at 4936.495 kb on - strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.510 kb on + strand, within QEN71_RS22230 at 4936.511 kb on - strand, within QEN71_RS22230 at 4936.511 kb on - strand, within QEN71_RS22230 at 4936.511 kb on - strand, within QEN71_RS22230 at 4936.511 kb on - strand, within QEN71_RS22230 at 4936.511 kb on - strand, within QEN71_RS22230 at 4937.214 kb on + strand at 4937.214 kb on + strand at 4937.219 kb on + strand at 4937.219 kb on + strand at 4937.288 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.315 kb on + strand at 4937.316 kb on - strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.332 kb on + strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.333 kb on - strand at 4937.385 kb on + strand at 4937.385 kb on + strand at 4937.385 kb on + strand at 4937.386 kb on - strand at 4937.386 kb on - strand at 4937.386 kb on - strand at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.398 kb on + strand, within QEN71_RS22235 at 4937.399 kb on - strand, within QEN71_RS22235 at 4937.399 kb on - strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.443 kb on + strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.444 kb on - strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.452 kb on + strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.453 kb on - strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.456 kb on + strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.457 kb on - strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.479 kb on + strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.480 kb on - strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.483 kb on + strand, within QEN71_RS22235 at 4937.484 kb on - strand, within QEN71_RS22235 at 4937.484 kb on - strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.523 kb on + strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.524 kb on - strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.608 kb on + strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.609 kb on - strand, within QEN71_RS22235 at 4937.636 kb on + strand, within QEN71_RS22235 at 4937.636 kb on + strand, within QEN71_RS22235 at 4937.651 kb on - strand, within QEN71_RS22235 at 4937.657 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.662 kb on + strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.663 kb on - strand, within QEN71_RS22235 at 4937.708 kb on - strand, within QEN71_RS22235 at 4937.729 kb on + strand, within QEN71_RS22235 at 4937.729 kb on + strand, within QEN71_RS22235 at 4937.730 kb on - strand, within QEN71_RS22235 at 4937.744 kb on - strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.800 kb on + strand, within QEN71_RS22235 at 4937.801 kb on - strand, within QEN71_RS22235 at 4937.801 kb on - strand, within QEN71_RS22235 at 4938.095 kb on - strand at 4938.114 kb on + strand at 4938.115 kb on - strand at 4938.115 kb on - strand at 4938.115 kb on - strand at 4938.481 kb on + strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.482 kb on - strand, within QEN71_RS22240 at 4938.498 kb on - strand, within QEN71_RS22240 at 4938.498 kb on - strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.670 kb on + strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.671 kb on - strand, within QEN71_RS22240 at 4938.868 kb on + strand, within QEN71_RS22240 at 4938.869 kb on - strand, within QEN71_RS22240 at 4938.891 kb on - strand, within QEN71_RS22240 at 4938.891 kb on - strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.922 kb on + strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240 at 4938.923 kb on - strand, within QEN71_RS22240
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,936,396 + QEN71_RS22230 0.70 -0.9 4,936,396 + QEN71_RS22230 0.70 -0.7 4,936,396 + QEN71_RS22230 0.70 -1.7 4,936,396 + QEN71_RS22230 0.70 -0.7 4,936,397 - QEN71_RS22230 0.70 -0.3 4,936,397 - QEN71_RS22230 0.70 +0.4 4,936,494 + QEN71_RS22230 0.81 +0.9 4,936,494 + QEN71_RS22230 0.81 +0.3 4,936,495 - QEN71_RS22230 0.81 -1.9 4,936,495 - QEN71_RS22230 0.81 -0.4 4,936,510 + QEN71_RS22230 0.83 +0.5 4,936,510 + QEN71_RS22230 0.83 -0.2 4,936,510 + QEN71_RS22230 0.83 -0.3 4,936,510 + QEN71_RS22230 0.83 -0.5 4,936,510 + QEN71_RS22230 0.83 -0.1 4,936,510 + QEN71_RS22230 0.83 -1.1 4,936,510 + QEN71_RS22230 0.83 -0.2 4,936,510 + QEN71_RS22230 0.83 +0.1 4,936,511 - QEN71_RS22230 0.83 +0.3 4,936,511 - QEN71_RS22230 0.83 +0.4 4,936,511 - QEN71_RS22230 0.83 +0.3 4,936,511 - QEN71_RS22230 0.83 +0.6 4,936,511 - QEN71_RS22230 0.83 +0.0 4,937,214 + +0.7 4,937,214 + +0.3 4,937,219 + -0.9 4,937,219 + -0.2 4,937,288 + -0.8 4,937,315 + -2.2 4,937,315 + -1.1 4,937,315 + +0.3 4,937,315 + -0.1 4,937,316 - +1.0 4,937,332 + -1.9 4,937,332 + -0.4 4,937,332 + -0.5 4,937,332 + -1.1 4,937,333 - +0.2 4,937,333 - -0.3 4,937,333 - +0.3 4,937,333 - -0.0 4,937,333 - -0.6 4,937,333 - -0.5 4,937,333 - -2.4 4,937,333 - +1.0 4,937,385 + +0.1 4,937,385 + +1.1 4,937,385 + +0.1 4,937,386 - -0.7 4,937,386 - -2.3 4,937,386 - -0.7 4,937,398 + QEN71_RS22235 0.11 +0.5 4,937,398 + QEN71_RS22235 0.11 -0.5 4,937,398 + QEN71_RS22235 0.11 -0.9 4,937,399 - QEN71_RS22235 0.11 +1.6 4,937,399 - QEN71_RS22235 0.11 -0.3 4,937,443 + QEN71_RS22235 0.17 -0.5 4,937,443 + QEN71_RS22235 0.17 +0.2 4,937,443 + QEN71_RS22235 0.17 -0.8 4,937,444 - QEN71_RS22235 0.17 -0.6 4,937,444 - QEN71_RS22235 0.17 -1.1 4,937,444 - QEN71_RS22235 0.17 -0.5 4,937,444 - QEN71_RS22235 0.17 -1.0 4,937,444 - QEN71_RS22235 0.17 +0.7 4,937,452 + QEN71_RS22235 0.18 -1.3 4,937,452 + QEN71_RS22235 0.18 +1.7 4,937,452 + QEN71_RS22235 0.18 -1.7 4,937,452 + QEN71_RS22235 0.18 -0.6 4,937,452 + QEN71_RS22235 0.18 -1.5 4,937,452 + QEN71_RS22235 0.18 -1.5 4,937,452 + QEN71_RS22235 0.18 +0.3 4,937,452 + QEN71_RS22235 0.18 +0.2 4,937,452 + QEN71_RS22235 0.18 +0.6 4,937,453 - QEN71_RS22235 0.18 -0.4 4,937,453 - QEN71_RS22235 0.18 -1.3 4,937,453 - QEN71_RS22235 0.18 -0.6 4,937,453 - QEN71_RS22235 0.18 -1.0 4,937,453 - QEN71_RS22235 0.18 +1.2 4,937,453 - QEN71_RS22235 0.18 -1.4 4,937,453 - QEN71_RS22235 0.18 +0.3 4,937,453 - QEN71_RS22235 0.18 -0.1 4,937,453 - QEN71_RS22235 0.18 +0.9 4,937,453 - QEN71_RS22235 0.18 +0.0 4,937,453 - QEN71_RS22235 0.18 -1.1 4,937,453 - QEN71_RS22235 0.18 -1.1 4,937,453 - QEN71_RS22235 0.18 -0.3 4,937,453 - QEN71_RS22235 0.18 +1.2 4,937,453 - QEN71_RS22235 0.18 -1.5 4,937,453 - QEN71_RS22235 0.18 -1.1 4,937,453 - QEN71_RS22235 0.18 +0.9 4,937,456 + QEN71_RS22235 0.19 -0.1 4,937,456 + QEN71_RS22235 0.19 +0.1 4,937,456 + QEN71_RS22235 0.19 -1.0 4,937,456 + QEN71_RS22235 0.19 +1.0 4,937,456 + QEN71_RS22235 0.19 -0.1 4,937,456 + QEN71_RS22235 0.19 -0.5 4,937,456 + QEN71_RS22235 0.19 -1.3 4,937,456 + QEN71_RS22235 0.19 +0.6 4,937,456 + QEN71_RS22235 0.19 +1.3 4,937,456 + QEN71_RS22235 0.19 +1.8 4,937,456 + QEN71_RS22235 0.19 -0.4 4,937,456 + QEN71_RS22235 0.19 -0.7 4,937,457 - QEN71_RS22235 0.19 +1.4 4,937,457 - QEN71_RS22235 0.19 +0.2 4,937,457 - QEN71_RS22235 0.19 +0.8 4,937,457 - QEN71_RS22235 0.19 -0.2 4,937,457 - QEN71_RS22235 0.19 -0.0 4,937,457 - QEN71_RS22235 0.19 -1.2 4,937,457 - QEN71_RS22235 0.19 -0.9 4,937,457 - QEN71_RS22235 0.19 -1.5 4,937,479 + QEN71_RS22235 0.22 -1.2 4,937,479 + QEN71_RS22235 0.22 +0.7 4,937,479 + QEN71_RS22235 0.22 -1.4 4,937,479 + QEN71_RS22235 0.22 +0.2 4,937,480 - QEN71_RS22235 0.22 -1.0 4,937,480 - QEN71_RS22235 0.22 +0.0 4,937,480 - QEN71_RS22235 0.22 -0.6 4,937,483 + QEN71_RS22235 0.22 -1.8 4,937,483 + QEN71_RS22235 0.22 -0.1 4,937,483 + QEN71_RS22235 0.22 +0.9 4,937,483 + QEN71_RS22235 0.22 -0.3 4,937,484 - QEN71_RS22235 0.22 -0.1 4,937,484 - QEN71_RS22235 0.22 -0.0 4,937,523 + QEN71_RS22235 0.27 -0.6 4,937,523 + QEN71_RS22235 0.27 -1.1 4,937,523 + QEN71_RS22235 0.27 -1.0 4,937,523 + QEN71_RS22235 0.27 +0.7 4,937,523 + QEN71_RS22235 0.27 +1.5 4,937,524 - QEN71_RS22235 0.28 -1.5 4,937,524 - QEN71_RS22235 0.28 +1.4 4,937,524 - QEN71_RS22235 0.28 -0.9 4,937,524 - QEN71_RS22235 0.28 -0.2 4,937,608 + QEN71_RS22235 0.38 +2.3 4,937,608 + QEN71_RS22235 0.38 -2.4 4,937,608 + QEN71_RS22235 0.38 -0.4 4,937,608 + QEN71_RS22235 0.38 +0.0 4,937,608 + QEN71_RS22235 0.38 -0.4 4,937,608 + QEN71_RS22235 0.38 -0.5 4,937,608 + QEN71_RS22235 0.38 -1.4 4,937,609 - QEN71_RS22235 0.38 -0.8 4,937,609 - QEN71_RS22235 0.38 +0.0 4,937,609 - QEN71_RS22235 0.38 -1.7 4,937,609 - QEN71_RS22235 0.38 -0.2 4,937,609 - QEN71_RS22235 0.38 -1.4 4,937,636 + QEN71_RS22235 0.42 -0.8 4,937,636 + QEN71_RS22235 0.42 -0.1 4,937,651 - QEN71_RS22235 0.44 +0.4 4,937,657 + QEN71_RS22235 0.45 +1.4 4,937,662 + QEN71_RS22235 0.45 +0.1 4,937,662 + QEN71_RS22235 0.45 -1.9 4,937,662 + QEN71_RS22235 0.45 -0.1 4,937,662 + QEN71_RS22235 0.45 -0.8 4,937,662 + QEN71_RS22235 0.45 -0.5 4,937,662 + QEN71_RS22235 0.45 +0.5 4,937,663 - QEN71_RS22235 0.45 +0.7 4,937,663 - QEN71_RS22235 0.45 -1.2 4,937,663 - QEN71_RS22235 0.45 -0.0 4,937,663 - QEN71_RS22235 0.45 -0.6 4,937,663 - QEN71_RS22235 0.45 +0.9 4,937,663 - QEN71_RS22235 0.45 -2.0 4,937,663 - QEN71_RS22235 0.45 +0.4 4,937,708 - QEN71_RS22235 0.51 -1.5 4,937,729 + QEN71_RS22235 0.54 -0.6 4,937,729 + QEN71_RS22235 0.54 +0.0 4,937,730 - QEN71_RS22235 0.54 +0.0 4,937,744 - QEN71_RS22235 0.56 -0.1 4,937,800 + QEN71_RS22235 0.63 +0.1 4,937,800 + QEN71_RS22235 0.63 -0.7 4,937,800 + QEN71_RS22235 0.63 -0.3 4,937,800 + QEN71_RS22235 0.63 +1.0 4,937,800 + QEN71_RS22235 0.63 +0.1 4,937,800 + QEN71_RS22235 0.63 +1.3 4,937,801 - QEN71_RS22235 0.63 -1.4 4,937,801 - QEN71_RS22235 0.63 +0.0 4,938,095 - -0.1 4,938,114 + +0.0 4,938,115 - +1.0 4,938,115 - +0.5 4,938,115 - -0.5 4,938,481 + QEN71_RS22240 0.35 +0.6 4,938,482 - QEN71_RS22240 0.36 +0.7 4,938,482 - QEN71_RS22240 0.36 -1.3 4,938,482 - QEN71_RS22240 0.36 +0.5 4,938,498 - QEN71_RS22240 0.37 +0.7 4,938,498 - QEN71_RS22240 0.37 -0.5 4,938,670 + QEN71_RS22240 0.53 -0.9 4,938,670 + QEN71_RS22240 0.53 -0.1 4,938,670 + QEN71_RS22240 0.53 -1.4 4,938,670 + QEN71_RS22240 0.53 -0.8 4,938,670 + QEN71_RS22240 0.53 +0.2 4,938,671 - QEN71_RS22240 0.53 +0.0 4,938,671 - QEN71_RS22240 0.53 -1.1 4,938,671 - QEN71_RS22240 0.53 +0.0 4,938,868 + QEN71_RS22240 0.71 -2.8 4,938,869 - QEN71_RS22240 0.71 +0.6 4,938,891 - QEN71_RS22240 0.73 -0.7 4,938,891 - QEN71_RS22240 0.73 -0.6 4,938,922 + QEN71_RS22240 0.76 -0.6 4,938,922 + QEN71_RS22240 0.76 -1.0 4,938,922 + QEN71_RS22240 0.76 +0.0 4,938,922 + QEN71_RS22240 0.76 +0.2 4,938,923 - QEN71_RS22240 0.76 -1.3 4,938,923 - QEN71_RS22240 0.76 +0.6 4,938,923 - QEN71_RS22240 0.76 -2.0 4,938,923 - QEN71_RS22240 0.76 -1.1
Or see this region's nucleotide sequence