Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS14080 and QEN71_RS14085 are separated by 305 nucleotides QEN71_RS14085 and QEN71_RS14090 are separated by 59 nucleotides QEN71_RS14090 and QEN71_RS14095 are separated by 64 nucleotides QEN71_RS14095 and QEN71_RS14100 are separated by 357 nucleotides
QEN71_RS14080: QEN71_RS14080 - 23S ribosomal RNA, at 3,140,395 to 3,143,275
_RS14080
QEN71_RS14085: QEN71_RS14085 - tRNA-Ala, at 3,143,581 to 3,143,656
_RS14085
QEN71_RS14090: QEN71_RS14090 - tRNA-Ile, at 3,143,716 to 3,143,792
_RS14090
QEN71_RS14095: QEN71_RS14095 - 16S ribosomal RNA, at 3,143,857 to 3,145,387
_RS14095
QEN71_RS14100: QEN71_RS14100 - alpha/beta hydrolase, at 3,145,745 to 3,146,701
_RS14100
Position (kb)
3143
3144
3145
3146 Strain fitness (log2 ratio)
-1
0
1
2 at 3145.931 kb on + strand, within QEN71_RS14100 at 3145.932 kb on - strand, within QEN71_RS14100 at 3145.932 kb on - strand, within QEN71_RS14100 at 3145.932 kb on - strand, within QEN71_RS14100 at 3146.217 kb on + strand, within QEN71_RS14100 at 3146.295 kb on + strand, within QEN71_RS14100 at 3146.296 kb on - strand, within QEN71_RS14100 at 3146.296 kb on - strand, within QEN71_RS14100 at 3146.296 kb on - strand, within QEN71_RS14100 at 3146.342 kb on + strand, within QEN71_RS14100 at 3146.342 kb on + strand, within QEN71_RS14100 at 3146.343 kb on - strand, within QEN71_RS14100 at 3146.343 kb on - strand, within QEN71_RS14100 at 3146.344 kb on + strand, within QEN71_RS14100 at 3146.345 kb on - strand, within QEN71_RS14100 at 3146.345 kb on - strand, within QEN71_RS14100 at 3146.345 kb on - strand, within QEN71_RS14100 at 3146.374 kb on + strand, within QEN71_RS14100
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 3,145,931 + QEN71_RS14100 0.19 +0.8 3,145,932 - QEN71_RS14100 0.20 -0.2 3,145,932 - QEN71_RS14100 0.20 +0.3 3,145,932 - QEN71_RS14100 0.20 +0.4 3,146,217 + QEN71_RS14100 0.49 -0.2 3,146,295 + QEN71_RS14100 0.57 -0.6 3,146,296 - QEN71_RS14100 0.58 +0.1 3,146,296 - QEN71_RS14100 0.58 -0.2 3,146,296 - QEN71_RS14100 0.58 +0.7 3,146,342 + QEN71_RS14100 0.62 -0.3 3,146,342 + QEN71_RS14100 0.62 +0.0 3,146,343 - QEN71_RS14100 0.62 +0.5 3,146,343 - QEN71_RS14100 0.62 -0.3 3,146,344 + QEN71_RS14100 0.63 -0.5 3,146,345 - QEN71_RS14100 0.63 +0.4 3,146,345 - QEN71_RS14100 0.63 -0.7 3,146,345 - QEN71_RS14100 0.63 +1.9 3,146,374 + QEN71_RS14100 0.66 -0.3
Or see this region's nucleotide sequence