Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09630

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09625 and QEN71_RS09630 are separated by 34 nucleotidesQEN71_RS09630 and QEN71_RS09635 overlap by 4 nucleotides QEN71_RS09625: QEN71_RS09625 - FUSC family protein, at 2,149,106 to 2,151,250 _RS09625 QEN71_RS09630: QEN71_RS09630 - DUF1656 domain-containing protein, at 2,151,285 to 2,151,494 _RS09630 QEN71_RS09635: QEN71_RS09635 - efflux RND transporter periplasmic adaptor subunit, at 2,151,491 to 2,152,498 _RS09635 Position (kb) 2151 2152Strain fitness (log2 ratio) -2 -1 0 1 2at 2150.405 kb on + strand, within QEN71_RS09625at 2150.405 kb on + strand, within QEN71_RS09625at 2150.405 kb on + strand, within QEN71_RS09625at 2150.405 kb on + strand, within QEN71_RS09625at 2150.406 kb on - strand, within QEN71_RS09625at 2150.406 kb on - strand, within QEN71_RS09625at 2150.406 kb on - strand, within QEN71_RS09625at 2150.406 kb on - strand, within QEN71_RS09625at 2150.570 kb on + strand, within QEN71_RS09625at 2150.958 kb on - strand, within QEN71_RS09625at 2151.313 kb on + strand, within QEN71_RS09630at 2151.314 kb on - strand, within QEN71_RS09630at 2151.314 kb on - strand, within QEN71_RS09630at 2151.351 kb on + strand, within QEN71_RS09630at 2151.351 kb on + strand, within QEN71_RS09630at 2151.352 kb on - strand, within QEN71_RS09630at 2151.399 kb on + strand, within QEN71_RS09630at 2151.400 kb on - strand, within QEN71_RS09630at 2151.400 kb on - strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.441 kb on + strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.442 kb on - strand, within QEN71_RS09630at 2151.488 kb on - strandat 2151.488 kb on - strandat 2151.488 kb on - strandat 2151.581 kb on + strandat 2151.582 kb on - strandat 2151.582 kb on - strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.584 kb on + strandat 2151.585 kb on - strandat 2151.585 kb on - strandat 2151.585 kb on - strandat 2151.585 kb on - strandat 2151.585 kb on - strandat 2151.585 kb on - strandat 2151.925 kb on + strand, within QEN71_RS09635at 2151.978 kb on - strand, within QEN71_RS09635

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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2,150,405 + QEN71_RS09625 0.61 +1.4
2,150,405 + QEN71_RS09625 0.61 -0.0
2,150,405 + QEN71_RS09625 0.61 +0.0
2,150,405 + QEN71_RS09625 0.61 -1.0
2,150,406 - QEN71_RS09625 0.61 +1.8
2,150,406 - QEN71_RS09625 0.61 -0.0
2,150,406 - QEN71_RS09625 0.61 +0.3
2,150,406 - QEN71_RS09625 0.61 +1.6
2,150,570 + QEN71_RS09625 0.68 -0.6
2,150,958 - QEN71_RS09625 0.86 -0.3
2,151,313 + QEN71_RS09630 0.13 -1.0
2,151,314 - QEN71_RS09630 0.14 -0.3
2,151,314 - QEN71_RS09630 0.14 -0.3
2,151,351 + QEN71_RS09630 0.31 +0.7
2,151,351 + QEN71_RS09630 0.31 +0.3
2,151,352 - QEN71_RS09630 0.32 -1.7
2,151,399 + QEN71_RS09630 0.54 +1.1
2,151,400 - QEN71_RS09630 0.55 -0.8
2,151,400 - QEN71_RS09630 0.55 -0.9
2,151,441 + QEN71_RS09630 0.74 +1.8
2,151,441 + QEN71_RS09630 0.74 +0.9
2,151,441 + QEN71_RS09630 0.74 +1.4
2,151,441 + QEN71_RS09630 0.74 -0.2
2,151,441 + QEN71_RS09630 0.74 +0.4
2,151,441 + QEN71_RS09630 0.74 +0.1
2,151,441 + QEN71_RS09630 0.74 +0.8
2,151,442 - QEN71_RS09630 0.75 +1.0
2,151,442 - QEN71_RS09630 0.75 -0.5
2,151,442 - QEN71_RS09630 0.75 -0.4
2,151,442 - QEN71_RS09630 0.75 +0.1
2,151,442 - QEN71_RS09630 0.75 +0.4
2,151,442 - QEN71_RS09630 0.75 -0.6
2,151,442 - QEN71_RS09630 0.75 +0.3
2,151,442 - QEN71_RS09630 0.75 -2.2
2,151,442 - QEN71_RS09630 0.75 +1.0
2,151,442 - QEN71_RS09630 0.75 +0.3
2,151,488 - -0.2
2,151,488 - +0.3
2,151,488 - -0.8
2,151,581 + -0.4
2,151,582 - +0.2
2,151,582 - +1.1
2,151,584 + +0.6
2,151,584 + +0.0
2,151,584 + +1.0
2,151,584 + -1.0
2,151,584 + +0.5
2,151,584 + -0.7
2,151,584 + +1.3
2,151,584 + -0.2
2,151,584 + +0.4
2,151,584 + +0.3
2,151,584 + +1.0
2,151,584 + +0.4
2,151,585 - +0.0
2,151,585 - +1.2
2,151,585 - -0.2
2,151,585 - -0.1
2,151,585 - -1.2
2,151,585 - +0.8
2,151,925 + QEN71_RS09635 0.43 -0.8
2,151,978 - QEN71_RS09635 0.48 -0.1

Or see this region's nucleotide sequence