Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04073

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
4,570,593	+				+1.3
4,570,601	-				+2.1
4,570,601	-				+2.2
4,570,603	-				+0.1
4,570,663	-		MIT1002_04072	0.14	+1.8
4,570,733	-		MIT1002_04072	0.22	+0.7
4,570,806	+		MIT1002_04072	0.30	+2.6
4,570,822	-		MIT1002_04072	0.32	+1.1
4,570,833	-		MIT1002_04072	0.34	-0.1
4,570,833	-		MIT1002_04072	0.34	+0.7
4,570,833	-		MIT1002_04072	0.34	+0.8
4,570,851	+		MIT1002_04072	0.36	+1.3
4,570,851	+		MIT1002_04072	0.36	+1.1
4,570,851	+		MIT1002_04072	0.36	+0.9
4,570,851	+		MIT1002_04072	0.36	+0.7
4,570,851	+		MIT1002_04072	0.36	+0.8
4,570,851	+		MIT1002_04072	0.36	-0.8
4,570,859	-		MIT1002_04072	0.37	+0.7
4,570,859	-		MIT1002_04072	0.37	+0.2
4,570,877	+		MIT1002_04072	0.39	+1.7
4,570,877	+		MIT1002_04072	0.39	+0.5
4,570,877	+		MIT1002_04072	0.39	+2.0
4,570,877	+		MIT1002_04072	0.39	+1.2
4,570,877	+		MIT1002_04072	0.39	+1.9
4,570,877	+		MIT1002_04072	0.39	+0.3
4,570,877	+		MIT1002_04072	0.39	+0.5
4,570,882	+		MIT1002_04072	0.39	+1.4
4,570,883	+		MIT1002_04072	0.39	+1.3
4,570,885	-		MIT1002_04072	0.40	-1.1
4,570,907	+		MIT1002_04072	0.42	+0.4
4,570,927	+		MIT1002_04072	0.44	+0.8
4,570,935	-		MIT1002_04072	0.45	+1.1
4,570,981	+		MIT1002_04072	0.51	+1.3
4,570,981	+		MIT1002_04072	0.51	+0.5
4,570,995	-		MIT1002_04072	0.52	+0.6
4,571,014	-		MIT1002_04072	0.55	+1.9
4,571,120	+		MIT1002_04072	0.67	+0.7
4,571,157	+		MIT1002_04072	0.71	+1.0
4,571,182	-		MIT1002_04072	0.74	+0.9
4,571,191	+		MIT1002_04072	0.75	+0.7
4,571,191	+		MIT1002_04072	0.75	+0.6
4,571,191	+		MIT1002_04072	0.75	+3.5
4,571,191	+		MIT1002_04072	0.75	-1.9
4,571,191	+		MIT1002_04072	0.75	+1.1
4,571,191	+		MIT1002_04072	0.75	+0.2
4,571,199	-		MIT1002_04072	0.76	+1.1
4,571,244	+		MIT1002_04072	0.81	+0.3
4,571,244	+		MIT1002_04072	0.81	-0.9
4,571,249	+		MIT1002_04072	0.82	+1.0
4,571,286	-		MIT1002_04072	0.86	-0.3
4,571,350	+				+1.2
4,571,362	+				+1.2
4,571,408	+				+3.9
4,571,414	-				+0.3
4,571,416	-				-0.1
4,571,508	+				-0.9
4,571,518	+				-0.5
4,571,518	+				+1.4
4,571,518	+				-0.5
4,571,518	+				+0.7
4,571,518	+				-0.4
4,571,526	-				+0.8
4,571,526	-				-0.1
4,571,562	+				+0.7
4,571,572	-				-1.4
4,571,630	-				-0.6
4,571,630	-				+2.1
4,571,661	-				-0.5
4,571,661	-				+0.9
4,571,666	-				-2.3
4,571,694	-				-0.0
4,571,694	-				+0.5
4,571,727	+		MIT1002_04073	0.12	+0.4
4,571,795	+		MIT1002_04073	0.18	-3.5
4,571,803	-		MIT1002_04073	0.18	-0.2
4,571,812	+		MIT1002_04073	0.19	+1.5
4,571,820	-		MIT1002_04073	0.20	+1.0
4,571,822	-		MIT1002_04073	0.20	-0.6
4,571,845	+		MIT1002_04073	0.22	+1.0
4,571,909	+		MIT1002_04073	0.27	+0.5
4,571,977	-		MIT1002_04073	0.33	-0.2
4,571,990	+		MIT1002_04073	0.34	+1.7
4,571,993	-		MIT1002_04073	0.34	-0.5
4,572,009	+		MIT1002_04073	0.35	-0.8
4,572,038	+		MIT1002_04073	0.38	+0.0
4,572,038	+		MIT1002_04073	0.38	+1.9
4,572,038	+		MIT1002_04073	0.38	-2.4
4,572,038	+		MIT1002_04073	0.38	+1.5
4,572,046	-		MIT1002_04073	0.38	+2.5
4,572,046	-		MIT1002_04073	0.38	-0.3
4,572,046	-		MIT1002_04073	0.38	-2.2
4,572,104	+		MIT1002_04073	0.43	+0.1
4,572,104	+		MIT1002_04073	0.43	-0.6
4,572,104	+		MIT1002_04073	0.43	-1.2
4,572,112	-		MIT1002_04073	0.44	+1.4
4,572,149	+		MIT1002_04073	0.47	-1.4
4,572,162	-		MIT1002_04073	0.48	-1.0
4,572,181	-		MIT1002_04073	0.50	-0.6
4,572,311	-		MIT1002_04073	0.60	+0.6
4,572,311	-		MIT1002_04073	0.60	-0.4
4,572,311	-		MIT1002_04073	0.60	+0.7
4,572,325	-		MIT1002_04073	0.62	+0.6
4,572,331	-		MIT1002_04073	0.62	-0.9
4,572,343	+		MIT1002_04073	0.63	-0.1
4,572,391	+		MIT1002_04073	0.67	+1.5
4,572,496	+		MIT1002_04073	0.76	+0.3
4,572,500	-		MIT1002_04073	0.76	-1.1
4,572,501	+		MIT1002_04073	0.76	-0.2
4,572,514	-		MIT1002_04073	0.77	+1.0
4,572,519	-		MIT1002_04073	0.78	+1.3
4,572,520	-		MIT1002_04073	0.78	-0.3
4,572,535	+		MIT1002_04073	0.79	+1.5
4,572,542	+		MIT1002_04073	0.79	-0.2
4,572,545	-		MIT1002_04073	0.80	+0.7
4,572,568	+		MIT1002_04073	0.82	-0.2
4,572,568	+		MIT1002_04073	0.82	+0.0
4,572,595	-		MIT1002_04073	0.84	-0.7
4,572,596	+		MIT1002_04073	0.84	-1.4
4,572,643	+		MIT1002_04073	0.88	-2.1
4,572,643	+		MIT1002_04073	0.88	-0.3
4,572,651	-		MIT1002_04073	0.89	+0.6
4,572,651	-		MIT1002_04073	0.89	-0.1
4,572,651	-		MIT1002_04073	0.89	-0.9
4,572,651	-		MIT1002_04073	0.89	-0.5
4,572,662	+		MIT1002_04073	0.89	-2.2
4,572,670	-				-0.1
4,572,670	-				+0.9
4,572,672	+				-0.4
4,572,677	+				-0.2
4,572,685	-				+0.3
4,572,698	+				+0.4
4,572,698	+				-0.0
4,572,698	+				+0.1
4,572,698	+				-0.3
4,572,698	+				-1.4
4,572,698	+				+0.4
4,572,706	-				-0.8
4,572,706	-				-0.8
4,572,798	-				-0.5
4,572,812	+				-0.8
4,572,887	+				-2.4
4,572,888	+				-0.1
4,572,888	+				+1.1
4,572,889	+				+0.6
4,572,889	+				+0.7
4,572,889	+				+2.3
4,572,895	-		MIT1002_04074	0.11	+0.5
4,572,897	-		MIT1002_04074	0.11	-0.5
4,572,897	-		MIT1002_04074	0.11	+0.9
4,572,897	-		MIT1002_04074	0.11	+0.7
4,572,897	-		MIT1002_04074	0.11	+0.6
4,572,897	-		MIT1002_04074	0.11	+0.4
4,572,897	-		MIT1002_04074	0.11	+0.3
4,572,920	-		MIT1002_04074	0.14	+0.8
4,572,921	-		MIT1002_04074	0.15	-2.9
4,572,946	+		MIT1002_04074	0.19	-0.0
4,572,951	+		MIT1002_04074	0.19	+0.9
4,572,953	-		MIT1002_04074	0.20	-1.9
4,572,953	-		MIT1002_04074	0.20	+1.0
4,572,953	-		MIT1002_04074	0.20	-2.6
4,572,955	-		MIT1002_04074	0.20	+0.4
4,572,955	-		MIT1002_04074	0.20	+0.0
4,572,955	-		MIT1002_04074	0.20	-0.5
4,572,955	-		MIT1002_04074	0.20	+0.2
4,572,955	-		MIT1002_04074	0.20	-0.3
4,572,955	-		MIT1002_04074	0.20	-0.5
4,572,955	-		MIT1002_04074	0.20	+0.8
4,572,977	-		MIT1002_04074	0.23	+0.9
4,573,015	+		MIT1002_04074	0.29	+0.5
4,573,052	-		MIT1002_04074	0.35	-0.1
4,573,062	-		MIT1002_04074	0.37	-0.3
4,573,067	-		MIT1002_04074	0.38	-1.1
4,573,075	-		MIT1002_04074	0.39	+0.5
4,573,075	-		MIT1002_04074	0.39	-0.0
4,573,083	+		MIT1002_04074	0.40	+0.5
4,573,083	+		MIT1002_04074	0.40	+0.0
4,573,090	+		MIT1002_04074	0.41	-0.5
4,573,168	+		MIT1002_04074	0.53	-0.0
4,573,178	+		MIT1002_04074	0.55	-0.8
4,573,186	-		MIT1002_04074	0.56	-1.7
4,573,196	+		MIT1002_04074	0.58	-1.7
4,573,196	+		MIT1002_04074	0.58	+0.9
4,573,196	+		MIT1002_04074	0.58	+1.5
4,573,197	-		MIT1002_04074	0.58	-1.1
4,573,201	+		MIT1002_04074	0.59	-0.3
4,573,204	-		MIT1002_04074	0.59	-0.2
4,573,204	-		MIT1002_04074	0.59	+0.3
4,573,204	-		MIT1002_04074	0.59	+0.8
4,573,204	-		MIT1002_04074	0.59	-0.2
4,573,204	-		MIT1002_04074	0.59	-1.3
4,573,204	-		MIT1002_04074	0.59	+0.8
4,573,204	-		MIT1002_04074	0.59	+0.5
4,573,241	-		MIT1002_04074	0.65	-0.1
4,573,246	-		MIT1002_04074	0.66	-4.9
4,573,259	-		MIT1002_04074	0.68	+2.2
4,573,267	-		MIT1002_04074	0.69	+0.6
4,573,267	-		MIT1002_04074	0.69	+0.5
4,573,272	-		MIT1002_04074	0.70	+0.7
4,573,273	+		MIT1002_04074	0.70	-0.5
4,573,273	+		MIT1002_04074	0.70	+1.1
4,573,273	+		MIT1002_04074	0.70	-0.6
4,573,281	-		MIT1002_04074	0.71	+2.4
4,573,281	-		MIT1002_04074	0.71	+1.9
4,573,315	-		MIT1002_04074	0.77	+0.0
4,573,327	-		MIT1002_04074	0.78	-0.5
4,573,328	-		MIT1002_04074	0.79	+0.1
4,573,328	-		MIT1002_04074	0.79	-0.1
4,573,329	-		MIT1002_04074	0.79	-0.7
4,573,347	-		MIT1002_04074	0.82	-0.5
4,573,347	-		MIT1002_04074	0.82	+1.7
4,573,349	+		MIT1002_04074	0.82	-0.9
4,573,349	+		MIT1002_04074	0.82	-0.2
4,573,351	+		MIT1002_04074	0.82	-0.8
4,573,357	-		MIT1002_04074	0.83	-1.2
4,573,357	-		MIT1002_04074	0.83	+0.5
4,573,362	+		MIT1002_04074	0.84	-0.2
4,573,367	+		MIT1002_04074	0.85	+0.9
4,573,367	+		MIT1002_04074	0.85	-0.0
4,573,370	-		MIT1002_04074	0.85	-0.8
4,573,377	+		MIT1002_04074	0.86	+0.7
4,573,382	+		MIT1002_04074	0.87	-0.3
4,573,430	+				-0.5
4,573,457	+				-0.5
4,573,457	+				-1.9
4,573,457	+				+0.8
4,573,508	+		MIT1002_04075	0.28	-1.2
4,573,508	+		MIT1002_04075	0.28	+1.8
4,573,516	-		MIT1002_04075	0.31	-0.6
4,573,517	-		MIT1002_04075	0.32	-0.7
4,573,527	-		MIT1002_04075	0.36	+2.0
4,573,527	-		MIT1002_04075	0.36	-1.1
4,573,546	+		MIT1002_04075	0.43	-0.7
4,573,585	+		MIT1002_04075	0.59	+0.2
4,573,715	-		MIT1002_04076	0.15	+0.4
4,573,730	+		MIT1002_04076	0.20	+0.7
4,573,730	+		MIT1002_04076	0.20	+1.2
4,573,766	+		MIT1002_04076	0.34	+0.3
4,573,766	+		MIT1002_04076	0.34	-0.4
4,573,766	+		MIT1002_04076	0.34	-1.0
4,573,767	-		MIT1002_04076	0.34	-0.0
4,573,774	-		MIT1002_04076	0.37	-0.8
4,573,774	-		MIT1002_04076	0.37	-0.8
4,573,774	-		MIT1002_04076	0.37	+0.6