Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03968

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
4,451,173	-		MIT1002_03966	0.40	-0.4
4,451,241	-		MIT1002_03966	0.46	+0.0
4,451,292	-		MIT1002_03966	0.51	-0.9
4,451,301	+		MIT1002_03966	0.52	-0.1
4,451,304	-		MIT1002_03966	0.52	+0.2
4,451,307	-		MIT1002_03966	0.52	+0.2
4,451,329	-		MIT1002_03966	0.54	+1.7
4,451,416	+		MIT1002_03966	0.62	-0.5
4,451,441	+		MIT1002_03966	0.64	-0.6
4,451,449	-		MIT1002_03966	0.65	-0.8
4,451,449	-		MIT1002_03966	0.65	+1.2
4,451,449	-		MIT1002_03966	0.65	-0.5
4,451,449	-		MIT1002_03966	0.65	+0.1
4,451,483	+		MIT1002_03966	0.68	+0.6
4,451,515	-		MIT1002_03966	0.70	-0.3
4,451,562	+		MIT1002_03966	0.74	+0.6
4,451,562	+		MIT1002_03966	0.74	-0.6
4,451,562	+		MIT1002_03966	0.74	-0.5
4,451,562	+		MIT1002_03966	0.74	+0.3
4,451,562	+		MIT1002_03966	0.74	+1.6
4,451,570	-		MIT1002_03966	0.75	-0.8
4,451,580	-		MIT1002_03966	0.76	+3.6
4,451,610	+		MIT1002_03966	0.79	-2.1
4,451,610	+		MIT1002_03966	0.79	+0.8
4,451,618	-		MIT1002_03966	0.79	-1.0
4,451,632	+		MIT1002_03966	0.81	+1.1
4,451,652	+		MIT1002_03966	0.82	+2.4
4,451,786	+				-0.5
4,451,786	+				-1.0
4,451,786	-				-0.3
4,451,796	-				-0.1
4,451,837	-				-0.3
4,451,909	-				-0.6
4,451,914	-				-0.1
4,452,052	+				-2.2
4,452,052	+				+1.6
4,452,052	+				-0.8
4,452,217	+				+3.5
4,452,217	+				+2.9
4,452,225	-				+3.3
4,452,225	-				+3.0
4,452,225	-				+3.1
4,452,225	-				+3.2
4,452,245	+		MIT1002_03968	0.11	+2.1
4,452,247	+		MIT1002_03968	0.12	+3.2
4,452,253	-		MIT1002_03968	0.13	+3.0
4,452,255	-		MIT1002_03968	0.13	+2.8
4,452,297	-		MIT1002_03968	0.19	+3.3
4,452,321	+		MIT1002_03968	0.22	+3.5
4,452,342	+		MIT1002_03968	0.25	+3.7
4,452,372	-		MIT1002_03968	0.29	+3.4
4,452,400	+		MIT1002_03968	0.33	+2.6
4,452,481	+		MIT1002_03968	0.44	+3.3
4,452,557	+		MIT1002_03968	0.55	+2.7
4,452,565	-		MIT1002_03968	0.56	+3.4
4,452,636	+		MIT1002_03968	0.66	+3.7
4,452,636	+		MIT1002_03968	0.66	+3.5
4,452,636	+		MIT1002_03968	0.66	+3.1
4,452,636	-		MIT1002_03968	0.66	+3.6
4,452,644	-		MIT1002_03968	0.67	+3.7
4,452,644	-		MIT1002_03968	0.67	+3.0
4,452,644	-		MIT1002_03968	0.67	+3.6
4,452,717	+		MIT1002_03968	0.77	+2.5
4,452,759	-		MIT1002_03968	0.83	+3.6
4,452,759	-		MIT1002_03968	0.83	+3.6
4,452,763	+		MIT1002_03968	0.83	+0.6
4,452,837	+				+3.9
4,452,843	+				+1.5
4,452,843	+				+3.8
4,452,843	+				+3.2
4,452,843	-				+2.5
4,452,856	-				+4.3
4,452,879	+				-0.3
4,452,887	+				+0.9
4,452,895	-				+2.4
4,452,909	+				-1.0
4,452,909	+				+0.7
4,452,914	+				+0.1
4,452,922	-				+3.2
4,452,922	-				+3.6
4,452,988	+				+0.2
4,453,069	-				+2.5
4,453,121	-				+4.1
4,453,128	-				+2.7
4,453,128	-				+2.6
4,453,240	+		MIT1002_03969	0.17	+2.6
4,453,289	-		MIT1002_03969	0.20	+3.6
4,453,289	-		MIT1002_03969	0.20	+3.5
4,453,289	-		MIT1002_03969	0.20	+3.4
4,453,289	-		MIT1002_03969	0.20	+3.0
4,453,293	+		MIT1002_03969	0.21	+3.0
4,453,366	+		MIT1002_03969	0.26	+3.1
4,453,374	-		MIT1002_03969	0.27	+2.0
4,453,392	+		MIT1002_03969	0.28	+0.7
4,453,402	-		MIT1002_03969	0.29	+2.4
4,453,473	+		MIT1002_03969	0.34	+3.2
4,453,473	+		MIT1002_03969	0.34	+3.0
4,453,503	-		MIT1002_03969	0.37	+2.1
4,453,530	+		MIT1002_03969	0.39	+3.1
4,453,548	+		MIT1002_03969	0.40	+3.6
4,453,556	-		MIT1002_03969	0.41	+3.6
4,453,564	+		MIT1002_03969	0.41	+2.3
4,453,595	+		MIT1002_03969	0.44	+3.8
4,453,595	+		MIT1002_03969	0.44	+3.1
4,453,595	+		MIT1002_03969	0.44	+4.0
4,453,595	+		MIT1002_03969	0.44	+3.2
4,453,595	+		MIT1002_03969	0.44	+3.1
4,453,595	+		MIT1002_03969	0.44	+4.4
4,453,603	-		MIT1002_03969	0.44	+2.9
4,453,603	-		MIT1002_03969	0.44	+4.0
4,453,680	-		MIT1002_03969	0.50	+4.0
4,453,684	+		MIT1002_03969	0.50	+3.9
4,453,685	-		MIT1002_03969	0.50	+3.1
4,453,702	-		MIT1002_03969	0.52	+3.5
4,453,757	-		MIT1002_03969	0.56	+4.8
4,453,801	+		MIT1002_03969	0.59	+2.8
4,453,857	-		MIT1002_03969	0.63	+4.5