Experiment: monoculture; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03692 and MIT1002_03693 overlap by 8 nucleotides MIT1002_03693 and MIT1002_03694 are separated by 57 nucleotides MIT1002_03694 and MIT1002_03695 are separated by 11 nucleotides
MIT1002_03692: MIT1002_03692 - Poly(A) polymerase I precursor, at 4,123,292 to 4,124,611
_03692
MIT1002_03693: MIT1002_03693 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 4,124,604 to 4,125,101
_03693
MIT1002_03694: MIT1002_03694 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,125,159 to 4,125,953
_03694
MIT1002_03695: MIT1002_03695 - Pantothenate synthetase, at 4,125,965 to 4,126,816
_03695
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4123.612 kb on + strand, within MIT1002_03692 at 4123.612 kb on + strand, within MIT1002_03692 at 4123.612 kb on + strand, within MIT1002_03692 at 4123.612 kb on + strand, within MIT1002_03692 at 4123.612 kb on + strand, within MIT1002_03692 at 4123.720 kb on + strand, within MIT1002_03692 at 4123.745 kb on + strand, within MIT1002_03692 at 4123.923 kb on + strand, within MIT1002_03692 at 4124.004 kb on + strand, within MIT1002_03692 at 4124.110 kb on + strand, within MIT1002_03692 at 4124.171 kb on + strand, within MIT1002_03692 at 4124.265 kb on + strand, within MIT1002_03692 at 4124.297 kb on - strand, within MIT1002_03692 at 4124.310 kb on + strand, within MIT1002_03692 at 4124.395 kb on + strand, within MIT1002_03692 at 4124.411 kb on + strand, within MIT1002_03692 at 4124.516 kb on + strand at 4124.586 kb on - strand at 4124.598 kb on + strand at 4125.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 4 remove 4,123,612 + MIT1002_03692 0.24 -0.2 4,123,612 + MIT1002_03692 0.24 +1.4 4,123,612 + MIT1002_03692 0.24 -1.3 4,123,612 + MIT1002_03692 0.24 -2.5 4,123,612 + MIT1002_03692 0.24 +0.7 4,123,720 + MIT1002_03692 0.32 +0.4 4,123,745 + MIT1002_03692 0.34 -0.6 4,123,923 + MIT1002_03692 0.48 -3.7 4,124,004 + MIT1002_03692 0.54 -1.5 4,124,110 + MIT1002_03692 0.62 +0.8 4,124,171 + MIT1002_03692 0.67 -0.2 4,124,265 + MIT1002_03692 0.74 -0.5 4,124,297 - MIT1002_03692 0.76 +1.0 4,124,310 + MIT1002_03692 0.77 +0.4 4,124,395 + MIT1002_03692 0.84 -0.3 4,124,411 + MIT1002_03692 0.85 +0.5 4,124,516 + -0.4 4,124,586 - -3.0 4,124,598 + -1.9 4,125,076 - -1.7
Or see this region's nucleotide sequence