Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03497

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,906,993	+				+0.1
3,907,263	+		MIT1002_03496	0.38	+1.0
3,907,271	-		MIT1002_03496	0.38	-0.8
3,907,292	+		MIT1002_03496	0.41	+0.7
3,907,379	-		MIT1002_03496	0.51	-0.0
3,907,425	+		MIT1002_03496	0.56	-0.3
3,907,446	+		MIT1002_03496	0.58	+1.1
3,907,492	+		MIT1002_03496	0.63	+0.6
3,907,512	+		MIT1002_03496	0.65	+3.3
3,907,512	+		MIT1002_03496	0.65	-1.4
3,907,520	-		MIT1002_03496	0.66	-1.0
3,907,565	+		MIT1002_03496	0.71	-1.2
3,907,573	-		MIT1002_03496	0.72	-0.8
3,907,588	-		MIT1002_03496	0.74	-0.4
3,907,674	-		MIT1002_03496	0.83	+1.2
3,907,716	+		MIT1002_03496	0.88	-0.4
3,907,731	+		MIT1002_03496	0.90	-2.9
3,907,734	+				-0.2
3,907,744	-				-1.5
3,907,810	-				+0.5
3,907,912	+				+0.3
3,907,912	+				-0.6
3,907,920	-		MIT1002_03497	0.11	+1.1
3,907,978	-		MIT1002_03497	0.17	+2.7
3,907,999	-		MIT1002_03497	0.19	-0.2
3,908,059	+		MIT1002_03497	0.25	+1.1
3,908,067	-		MIT1002_03497	0.26	-0.2
3,908,101	-		MIT1002_03497	0.30	-0.0
3,908,243	+		MIT1002_03497	0.44	-1.4
3,908,243	+		MIT1002_03497	0.44	-0.0
3,908,243	+		MIT1002_03497	0.44	-0.9
3,908,251	-		MIT1002_03497	0.45	-0.5
3,908,303	+		MIT1002_03497	0.51	-0.0
3,908,346	+		MIT1002_03497	0.55	-1.0
3,908,353	-		MIT1002_03497	0.56	-0.0
3,908,457	-		MIT1002_03497	0.67	+0.7
3,908,457	-		MIT1002_03497	0.67	-0.3
3,908,468	+		MIT1002_03497	0.68	-0.5
3,908,559	-		MIT1002_03497	0.78	-0.2
3,908,634	-		MIT1002_03497	0.85	-2.1
3,908,635	-		MIT1002_03497	0.86	-0.8
3,908,645	-		MIT1002_03497	0.87	-0.5
3,908,648	-		MIT1002_03497	0.87	+0.4
3,908,685	+				-1.1
3,908,700	-				+1.2
3,908,726	-				-0.6
3,908,800	-				+0.8
3,908,800	-				-0.5
3,908,840	+				+0.5
3,909,071	-		MIT1002_03498	0.14	+1.4
3,909,091	-		MIT1002_03498	0.18	+0.1
3,909,101	+		MIT1002_03498	0.19	-0.1
3,909,132	+		MIT1002_03498	0.24	-1.7
3,909,140	-		MIT1002_03498	0.25	-0.6
3,909,140	-		MIT1002_03498	0.25	+1.4
3,909,140	-		MIT1002_03498	0.25	+1.4
3,909,229	-		MIT1002_03498	0.40	+0.4
3,909,245	-		MIT1002_03498	0.42	+1.0
3,909,344	-		MIT1002_03498	0.58	+0.3
3,909,391	-		MIT1002_03498	0.66	-0.1
3,909,420	+		MIT1002_03498	0.70	+0.5
3,909,420	+		MIT1002_03498	0.70	-0.7
3,909,420	+		MIT1002_03498	0.70	-0.1
3,909,420	+		MIT1002_03498	0.70	-2.4
3,909,428	-		MIT1002_03498	0.72	-0.6
3,909,441	+		MIT1002_03498	0.74	+0.3
3,909,443	+		MIT1002_03498	0.74	+0.8
3,909,474	+		MIT1002_03498	0.79	-1.6
3,909,476	+		MIT1002_03498	0.79	-0.4
3,909,481	+		MIT1002_03498	0.80	-0.1
3,909,579	-				-0.9
3,909,591	-				-1.0
3,909,612	+				-0.9
3,909,620	-				-0.7
3,909,651	-				-0.1
3,909,750	+		MIT1002_03499	0.11	-0.1