Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03240

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,607,109	+				+0.7
3,607,117	-				-0.4
3,607,170	+				-1.9
3,607,196	+				-0.0
3,607,203	-				-0.5
3,607,215	+				-0.4
3,607,257	-				+0.0
3,607,284	-				+1.8
3,607,295	+				-1.3
3,607,303	-				+0.1
3,607,319	+				-0.5
3,607,435	-				-0.5
3,607,489	+				-1.5
3,607,610	+				-0.5
3,607,618	-				-0.1
3,607,628	+				+0.6
3,607,638	-		MIT1002_03239	0.11	-0.4
3,607,649	+		MIT1002_03239	0.16	-1.5
3,607,649	+		MIT1002_03239	0.16	+1.4
3,607,657	-		MIT1002_03239	0.20	-1.0
3,607,803	+		MIT1002_03239	0.89	+0.6
3,607,845	+				-0.1
3,607,845	+				+0.2
3,607,853	+				+0.3
3,607,924	+				-0.0
3,607,973	+				+0.4
3,608,001	-				+0.3
3,608,014	+				-0.7
3,608,097	+				+0.2
3,608,104	+				-0.3
3,608,117	-				-0.1
3,608,169	+				+0.8
3,608,174	+				+0.6
3,608,177	-				+2.6
3,608,177	-				-1.3
3,608,182	-				+0.1
3,608,185	-				-0.6
3,608,235	+		MIT1002_03240	0.11	+0.2
3,608,235	+		MIT1002_03240	0.11	+0.9
3,608,243	-		MIT1002_03240	0.11	+1.0
3,608,248	-		MIT1002_03240	0.12	-0.2
3,608,337	+		MIT1002_03240	0.17	-0.2
3,608,337	+		MIT1002_03240	0.17	-0.1
3,608,337	+		MIT1002_03240	0.17	-1.2
3,608,345	-		MIT1002_03240	0.18	+0.0
3,608,345	-		MIT1002_03240	0.18	+0.0
3,608,347	+		MIT1002_03240	0.18	-0.2
3,608,355	-		MIT1002_03240	0.18	+1.0
3,608,355	-		MIT1002_03240	0.18	+2.5
3,608,431	+		MIT1002_03240	0.23	-1.7
3,608,431	+		MIT1002_03240	0.23	+0.3
3,608,431	+		MIT1002_03240	0.23	+0.3
3,608,439	-		MIT1002_03240	0.23	-0.1
3,608,439	-		MIT1002_03240	0.23	+1.4
3,608,439	-		MIT1002_03240	0.23	-1.4
3,608,439	-		MIT1002_03240	0.23	+0.4
3,608,439	-		MIT1002_03240	0.23	+1.0
3,608,439	-		MIT1002_03240	0.23	+0.9
3,608,441	+		MIT1002_03240	0.23	+1.2
3,608,443	+		MIT1002_03240	0.24	+0.4
3,608,498	+		MIT1002_03240	0.27	+0.3
3,608,501	-		MIT1002_03240	0.27	-0.9
3,608,518	+		MIT1002_03240	0.28	-1.0
3,608,518	+		MIT1002_03240	0.28	-0.1
3,608,518	+		MIT1002_03240	0.28	+0.7
3,608,526	-		MIT1002_03240	0.29	+0.5
3,608,543	+		MIT1002_03240	0.30	-1.2
3,608,551	-		MIT1002_03240	0.30	-0.1
3,608,553	+		MIT1002_03240	0.30	+1.1
3,608,561	-		MIT1002_03240	0.31	-0.1
3,608,773	+		MIT1002_03240	0.44	+1.3
3,608,786	-		MIT1002_03240	0.45	-0.2
3,608,838	+		MIT1002_03240	0.48	+0.4
3,608,870	+		MIT1002_03240	0.50	+0.5
3,608,870	+		MIT1002_03240	0.50	-0.2
3,608,876	-		MIT1002_03240	0.50	-0.2
3,608,878	-		MIT1002_03240	0.50	-0.4
3,608,897	+		MIT1002_03240	0.51	+0.7
3,608,902	+		MIT1002_03240	0.52	+0.6
3,608,911	-		MIT1002_03240	0.52	-0.1
3,608,916	-		MIT1002_03240	0.53	+0.4
3,609,062	-		MIT1002_03240	0.62	+0.0
3,609,117	+		MIT1002_03240	0.65	-2.0
3,609,136	+		MIT1002_03240	0.66	+1.7
3,609,136	+		MIT1002_03240	0.66	+1.1
3,609,179	+		MIT1002_03240	0.69	-0.5
3,609,187	-		MIT1002_03240	0.69	-0.3
3,609,245	-		MIT1002_03240	0.73	-1.8
3,609,288	+		MIT1002_03240	0.75	+3.1
3,609,335	+		MIT1002_03240	0.78	+0.0
3,609,345	+		MIT1002_03240	0.79	-0.3
3,609,345	-		MIT1002_03240	0.79	+0.7
3,609,353	-		MIT1002_03240	0.79	-0.5
3,609,353	-		MIT1002_03240	0.79	-0.9
3,609,357	+		MIT1002_03240	0.80	+0.2
3,609,388	-		MIT1002_03240	0.81	+0.6
3,609,398	+		MIT1002_03240	0.82	+0.2
3,609,401	+		MIT1002_03240	0.82	-0.3
3,609,403	+		MIT1002_03240	0.82	+0.2
3,609,406	-		MIT1002_03240	0.83	-0.1
3,609,411	-		MIT1002_03240	0.83	+0.3
3,609,415	-		MIT1002_03240	0.83	-0.3
3,609,417	+		MIT1002_03240	0.83	-1.8
3,609,485	+		MIT1002_03240	0.87	-0.4
3,609,493	-		MIT1002_03240	0.88	-0.5
3,609,662	-				+0.4
3,609,662	-				-0.6
3,609,662	-				+0.6
3,609,676	-				+1.3
3,609,691	-				-2.4
3,609,727	-				+0.2
3,609,823	+				-0.3
3,609,862	-				+0.0
3,609,868	+				-0.5
3,609,878	+				-1.3
3,609,886	-				+3.0
3,609,886	-				-0.2
3,609,898	+				-0.6
3,610,044	+				-0.8
3,610,058	-				-2.1
3,610,059	+				+1.3
3,610,059	+				-0.8
3,610,067	-				-0.9
3,610,067	-				-1.5
3,610,194	+				+0.1
3,610,256	+				-0.5
3,610,304	-				-0.7
3,610,304	-				+0.3
3,610,332	+		MIT1002_03241	0.13	-0.4
3,610,332	+		MIT1002_03241	0.13	+0.4
3,610,402	+		MIT1002_03241	0.22	+0.2
3,610,402	+		MIT1002_03241	0.22	+0.6
3,610,422	-		MIT1002_03241	0.25	-1.0
3,610,447	-		MIT1002_03241	0.28	-0.7
3,610,537	-		MIT1002_03241	0.40	+0.8
3,610,553	-		MIT1002_03241	0.42	+1.1
3,610,562	+		MIT1002_03241	0.43	-1.0
3,610,663	+		MIT1002_03241	0.56	+0.8