Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03038

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,385,196	+		MIT1002_03037	0.40	+0.4
3,385,235	-		MIT1002_03037	0.43	+0.7
3,385,292	+		MIT1002_03037	0.48	+0.6
3,385,301	-		MIT1002_03037	0.48	+1.2
3,385,341	+		MIT1002_03037	0.52	+0.3
3,385,364	-		MIT1002_03037	0.54	+0.7
3,385,425	+		MIT1002_03037	0.59	+1.5
3,385,426	-		MIT1002_03037	0.59	-0.8
3,385,578	-		MIT1002_03037	0.71	+1.4
3,385,589	+		MIT1002_03037	0.72	-0.3
3,385,589	+		MIT1002_03037	0.72	+1.5
3,385,615	-		MIT1002_03037	0.74	+1.0
3,385,617	+		MIT1002_03037	0.74	-2.0
3,385,617	+		MIT1002_03037	0.74	+0.2
3,385,660	+		MIT1002_03037	0.78	+0.8
3,385,665	+		MIT1002_03037	0.78	-0.3
3,385,668	-		MIT1002_03037	0.79	+1.3
3,385,674	-		MIT1002_03037	0.79	+1.5
3,385,688	+		MIT1002_03037	0.80	-1.2
3,385,689	+		MIT1002_03037	0.80	-0.1
3,385,751	+		MIT1002_03037	0.85	+0.2
3,385,779	+		MIT1002_03037	0.88	-0.3
3,385,817	+				-1.1
3,385,831	+				-1.3
3,385,838	+				+0.6
3,385,838	+				+0.2
3,385,846	-				+0.3
3,385,846	-				+0.1
3,385,901	+				-2.3
3,385,909	-				+0.4
3,385,909	-				+0.3
3,385,959	-				+2.1
3,385,993	+				+0.4
3,386,063	+				-0.3
3,386,073	-				+2.2
3,386,073	-				-0.7
3,386,073	-				+1.8
3,386,073	-				-1.1
3,386,073	-				-0.0
3,386,089	+				-1.9
3,386,158	-				+1.9
3,386,187	+				-0.7
3,386,187	+				+1.7
3,386,187	+				+2.5
3,386,249	+				-0.2
3,386,311	+				+0.2
3,386,314	-				+3.4
3,386,330	+				+0.7
3,386,374	-		MIT1002_03038	0.11	-0.3
3,386,374	-		MIT1002_03038	0.11	+1.0
3,386,374	-		MIT1002_03038	0.11	-0.0
3,386,380	+		MIT1002_03038	0.11	-0.1
3,386,397	-		MIT1002_03038	0.12	-0.4
3,386,414	+		MIT1002_03038	0.12	-0.2
3,386,414	+		MIT1002_03038	0.12	-1.0
3,386,422	+		MIT1002_03038	0.12	+0.6
3,386,422	-		MIT1002_03038	0.12	-0.2
3,386,422	-		MIT1002_03038	0.12	-0.0
3,386,422	-		MIT1002_03038	0.12	-1.4
3,386,422	-		MIT1002_03038	0.12	-2.8
3,386,422	-		MIT1002_03038	0.12	+0.2
3,386,422	-		MIT1002_03038	0.12	+2.1
3,386,525	-		MIT1002_03038	0.16	+0.7
3,386,562	-		MIT1002_03038	0.17	-0.8
3,386,581	-		MIT1002_03038	0.17	+2.6
3,386,590	-		MIT1002_03038	0.18	+0.1
3,386,592	+		MIT1002_03038	0.18	+0.7
3,386,640	+		MIT1002_03038	0.19	-0.0
3,386,640	+		MIT1002_03038	0.19	-0.3
3,386,642	+		MIT1002_03038	0.19	-0.4
3,386,658	+		MIT1002_03038	0.20	+0.4
3,386,692	+		MIT1002_03038	0.21	+0.7
3,386,700	-		MIT1002_03038	0.21	+0.5
3,386,785	-		MIT1002_03038	0.24	+0.4
3,386,785	-		MIT1002_03038	0.24	-1.3
3,386,793	+		MIT1002_03038	0.24	+1.2
3,386,793	+		MIT1002_03038	0.24	-0.5
3,386,891	-		MIT1002_03038	0.27	-1.0
3,386,891	-		MIT1002_03038	0.27	-0.4
3,386,923	-		MIT1002_03038	0.28	-1.8
3,386,925	+		MIT1002_03038	0.28	-0.4
3,386,925	+		MIT1002_03038	0.28	+0.5
3,386,925	+		MIT1002_03038	0.28	-0.8
3,386,927	+		MIT1002_03038	0.28	-0.8
3,386,929	+		MIT1002_03038	0.28	+0.1
3,386,933	-		MIT1002_03038	0.28	-0.3
3,386,933	-		MIT1002_03038	0.28	-1.5
3,386,934	+		MIT1002_03038	0.28	-1.6
3,386,942	-		MIT1002_03038	0.28	-0.1
3,386,942	-		MIT1002_03038	0.28	-0.4
3,387,040	+		MIT1002_03038	0.31	-0.2
3,387,040	+		MIT1002_03038	0.31	+1.0
3,387,040	+		MIT1002_03038	0.31	+0.2
3,387,040	+		MIT1002_03038	0.31	+0.0
3,387,040	+		MIT1002_03038	0.31	-0.4
3,387,040	+		MIT1002_03038	0.31	+1.8
3,387,048	-		MIT1002_03038	0.32	-1.7
3,387,048	-		MIT1002_03038	0.32	+2.6
3,387,100	+		MIT1002_03038	0.33	+1.9
3,387,118	-		MIT1002_03038	0.34	+0.2
3,387,197	+		MIT1002_03038	0.36	+0.7
3,387,200	-		MIT1002_03038	0.36	+0.2
3,387,225	-		MIT1002_03038	0.37	+1.3
3,387,229	+		MIT1002_03038	0.37	-2.0
3,387,261	+		MIT1002_03038	0.38	-0.1
3,387,261	+		MIT1002_03038	0.38	+1.1
3,387,269	-		MIT1002_03038	0.38	-1.0
3,387,269	-		MIT1002_03038	0.38	-0.3
3,387,274	+		MIT1002_03038	0.38	-0.4
3,387,292	-		MIT1002_03038	0.39	-1.1
3,387,300	-		MIT1002_03038	0.39	-1.6
3,387,318	-		MIT1002_03038	0.40	+0.5
3,387,382	-		MIT1002_03038	0.42	-1.8
3,387,416	-		MIT1002_03038	0.43	-0.0
3,387,552	+		MIT1002_03038	0.47	+0.1
3,387,552	+		MIT1002_03038	0.47	-0.2
3,387,552	+		MIT1002_03038	0.47	+0.7
3,387,552	+		MIT1002_03038	0.47	-1.3
3,387,557	+		MIT1002_03038	0.47	+0.5
3,387,632	-		MIT1002_03038	0.49	-0.0
3,387,678	+		MIT1002_03038	0.51	+0.9
3,387,728	-		MIT1002_03038	0.52	+0.3
3,387,816	+		MIT1002_03038	0.55	+2.8
3,387,816	+		MIT1002_03038	0.55	+4.8
3,387,838	+		MIT1002_03038	0.56	-0.0
3,387,881	+		MIT1002_03038	0.57	+0.5
3,387,903	+		MIT1002_03038	0.58	-0.8
3,387,903	+		MIT1002_03038	0.58	-0.8
3,387,908	+		MIT1002_03038	0.58	-1.6
3,387,908	+		MIT1002_03038	0.58	+1.8
3,387,908	+		MIT1002_03038	0.58	+0.4
3,387,916	-		MIT1002_03038	0.58	-1.2
3,387,916	-		MIT1002_03038	0.58	-0.5
3,387,941	+		MIT1002_03038	0.59	+0.2
3,387,941	-		MIT1002_03038	0.59	-0.3
3,387,952	+		MIT1002_03038	0.59	+0.4
3,387,986	-		MIT1002_03038	0.60	+0.8
3,387,986	-		MIT1002_03038	0.60	+4.3
3,388,028	-		MIT1002_03038	0.62	-1.5
3,388,055	+		MIT1002_03038	0.62	-0.0
3,388,179	-		MIT1002_03038	0.66	-1.7
3,388,326	-		MIT1002_03038	0.71	-0.2
3,388,363	+		MIT1002_03038	0.72	-1.8
3,388,589	+		MIT1002_03038	0.79	-0.1
3,388,590	+		MIT1002_03038	0.79	-0.1
3,388,603	-		MIT1002_03038	0.79	-0.1
3,388,636	+		MIT1002_03038	0.80	-2.0
3,388,644	-		MIT1002_03038	0.80	-1.3
3,388,646	-		MIT1002_03038	0.80	-0.1
3,388,673	+		MIT1002_03038	0.81	+0.8
3,388,761	+		MIT1002_03038	0.84	-1.5
3,388,761	+		MIT1002_03038	0.84	-1.8
3,388,761	+		MIT1002_03038	0.84	+0.4
3,388,761	+		MIT1002_03038	0.84	-0.8
3,388,769	-		MIT1002_03038	0.84	+0.7
3,388,769	-		MIT1002_03038	0.84	+0.1
3,388,769	-		MIT1002_03038	0.84	+1.1
3,388,805	-		MIT1002_03038	0.85	-1.2
3,388,807	+		MIT1002_03038	0.85	+2.4
3,388,812	+		MIT1002_03038	0.85	-0.5
3,388,815	-		MIT1002_03038	0.86	+0.7
3,388,815	-		MIT1002_03038	0.86	-0.8
3,388,836	+		MIT1002_03038	0.86	+1.0
3,388,886	-		MIT1002_03038	0.88	+1.8
3,388,909	+		MIT1002_03038	0.88	-0.1
3,388,951	-		MIT1002_03038	0.90	+0.3
3,388,965	+				+1.4
3,388,985	-				-0.6
3,388,985	-				-0.7
3,389,041	+				-0.1
3,389,048	+				+0.5
3,389,059	-				-1.1
3,389,080	-				-0.9
3,389,171	+				+1.5
3,389,210	+				-0.2
3,389,218	-				+0.5
3,389,225	+				-0.5
3,389,230	-				-0.0
3,389,230	-				-1.7
3,389,248	+				+0.4
3,389,296	-				-1.5
3,389,299	-				-0.1
3,389,309	-				-0.5
3,389,340	+				+0.0
3,389,387	-				-0.7
3,389,390	+				+0.3
3,389,398	-				+0.1
3,389,412	+				+0.7
3,389,422	+				-0.9
3,389,427	+				+0.2
3,389,427	+				+1.2
3,389,435	-				+0.5
3,389,455	-				-0.1
3,389,535	-		MIT1002_03039	0.14	+0.7
3,389,719	-		MIT1002_03039	0.25	+0.2
3,389,856	+		MIT1002_03039	0.33	-1.1
3,389,856	+		MIT1002_03039	0.33	+0.2
3,389,856	+		MIT1002_03039	0.33	-0.0
3,389,858	-		MIT1002_03039	0.33	-0.3
3,389,864	-		MIT1002_03039	0.33	-0.9
3,389,864	-		MIT1002_03039	0.33	-0.0
3,389,898	+		MIT1002_03039	0.35	+0.7
3,389,904	-		MIT1002_03039	0.35	+0.4
3,389,913	+		MIT1002_03039	0.36	-0.6
3,389,957	+		MIT1002_03039	0.38	-0.6
3,389,965	-		MIT1002_03039	0.39	-0.5
3,389,965	-		MIT1002_03039	0.39	+0.1
3,389,967	+		MIT1002_03039	0.39	-1.1
3,390,042	+		MIT1002_03039	0.43	+0.7
3,390,050	-		MIT1002_03039	0.44	+0.1
3,390,050	-		MIT1002_03039	0.44	-0.8
3,390,050	-		MIT1002_03039	0.44	+0.9
3,390,083	-		MIT1002_03039	0.45	-0.4
3,390,189	+		MIT1002_03039	0.51	-1.7
3,390,197	-		MIT1002_03039	0.52	+0.4
3,390,199	+		MIT1002_03039	0.52	-0.6
3,390,199	+		MIT1002_03039	0.52	-0.3
3,390,207	-		MIT1002_03039	0.52	+0.2
3,390,209	+		MIT1002_03039	0.53	+0.4
3,390,209	+		MIT1002_03039	0.53	+0.0
3,390,211	+		MIT1002_03039	0.53	-0.1
3,390,217	-		MIT1002_03039	0.53	-0.9
3,390,217	-		MIT1002_03039	0.53	+0.4
3,390,217	-		MIT1002_03039	0.53	+1.2
3,390,219	-		MIT1002_03039	0.53	-1.3
3,390,229	+		MIT1002_03039	0.54	-1.9
3,390,229	+		MIT1002_03039	0.54	+0.7
3,390,229	+		MIT1002_03039	0.54	-1.9
3,390,237	-		MIT1002_03039	0.54	+0.4
3,390,237	-		MIT1002_03039	0.54	-0.5
3,390,271	+		MIT1002_03039	0.56	+0.0
3,390,286	-		MIT1002_03039	0.57	-0.4