Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02862

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,176,010	+		MIT1002_02861	0.25	+0.4
3,176,049	+		MIT1002_02861	0.28	-1.3
3,176,072	+		MIT1002_02861	0.30	+1.3
3,176,072	+		MIT1002_02861	0.30	-1.1
3,176,077	+		MIT1002_02861	0.30	+0.3
3,176,080	-		MIT1002_02861	0.31	+3.2
3,176,080	-		MIT1002_02861	0.31	+0.3
3,176,124	+		MIT1002_02861	0.34	+0.3
3,176,153	+		MIT1002_02861	0.36	-0.5
3,176,153	+		MIT1002_02861	0.36	-0.3
3,176,161	-		MIT1002_02861	0.37	+0.1
3,176,185	+		MIT1002_02861	0.39	-0.6
3,176,188	-		MIT1002_02861	0.39	-0.5
3,176,188	-		MIT1002_02861	0.39	+0.8
3,176,188	-		MIT1002_02861	0.39	+1.5
3,176,380	+		MIT1002_02861	0.53	+1.4
3,176,400	+		MIT1002_02861	0.55	-0.4
3,176,443	+		MIT1002_02861	0.58	+1.7
3,176,451	-		MIT1002_02861	0.59	-0.6
3,176,505	-		MIT1002_02861	0.63	-0.7
3,176,522	-		MIT1002_02861	0.64	-0.1
3,176,586	+		MIT1002_02861	0.69	-2.7
3,176,586	+		MIT1002_02861	0.69	-0.1
3,176,595	-		MIT1002_02861	0.70	-0.8
3,176,604	+		MIT1002_02861	0.70	-0.8
3,176,612	-		MIT1002_02861	0.71	-0.4
3,176,614	+		MIT1002_02861	0.71	-1.5
3,176,614	+		MIT1002_02861	0.71	-0.1
3,176,622	-		MIT1002_02861	0.72	-1.5
3,176,691	-		MIT1002_02861	0.77	+0.3
3,176,704	-		MIT1002_02861	0.78	+1.0
3,176,713	-		MIT1002_02861	0.78	-0.8
3,176,716	+		MIT1002_02861	0.79	-0.2
3,176,723	+		MIT1002_02861	0.79	-2.0
3,176,723	+		MIT1002_02861	0.79	-0.8
3,176,751	+		MIT1002_02861	0.81	+0.2
3,176,751	+		MIT1002_02861	0.81	+0.0
3,176,759	-		MIT1002_02861	0.82	+0.3
3,176,759	-		MIT1002_02861	0.82	-1.5
3,176,769	-		MIT1002_02861	0.83	-0.1
3,176,795	-		MIT1002_02861	0.85	+0.4
3,176,823	+		MIT1002_02861	0.87	-0.1
3,176,829	+		MIT1002_02861	0.87	+0.4
3,176,831	-		MIT1002_02861	0.87	-1.3
3,176,831	-		MIT1002_02861	0.87	+0.6
3,176,839	+		MIT1002_02861	0.88	-0.6
3,176,878	+				-1.6
3,176,886	-				-0.4
3,176,886	-				+0.2
3,176,897	+				-1.9
3,176,907	-				-0.6
3,176,922	+				-0.9
3,176,925	-				+1.5
3,176,932	+				-0.9
3,176,935	-				-1.4
3,176,940	-				-2.0
3,176,951	-				+0.1
3,176,988	-				-0.2
3,177,066	-		MIT1002_02862	0.32	-0.3
3,177,067	-		MIT1002_02862	0.33	+0.3
3,177,067	-		MIT1002_02862	0.33	-0.4
3,177,126	+		MIT1002_02862	0.62	-0.2
3,177,126	+		MIT1002_02862	0.62	-1.3
3,177,134	-		MIT1002_02862	0.66	+1.1
3,177,134	-		MIT1002_02862	0.66	-0.5
3,177,134	-		MIT1002_02862	0.66	+1.4
3,177,134	-		MIT1002_02862	0.66	-1.4
3,177,134	-		MIT1002_02862	0.66	+0.4
3,177,139	-		MIT1002_02862	0.68	+0.2
3,177,139	-		MIT1002_02862	0.68	-1.1
3,177,146	+		MIT1002_02862	0.72	-1.1
3,177,159	-		MIT1002_02862	0.78	-0.0
3,177,159	-		MIT1002_02862	0.78	+0.5
3,177,161	+		MIT1002_02862	0.79	-0.8
3,177,169	-		MIT1002_02862	0.83	-0.8
3,177,169	-		MIT1002_02862	0.83	-0.6
3,177,181	+		MIT1002_02862	0.89	-1.9
3,177,194	-				-0.8
3,177,196	+				+1.8
3,177,204	+				+0.5
3,177,204	+				-0.6
3,177,204	+				+0.9
3,177,204	+				-0.8
3,177,205	+				+0.5
3,177,205	+				-1.2
3,177,206	+				+1.2
3,177,207	-				+0.3
3,177,212	-				+0.3
3,177,212	-				-0.3
3,177,212	-				+0.4
3,177,212	-				-1.3
3,177,213	-				+0.4
3,177,222	-				+0.9
3,177,229	+				+0.5
3,177,229	+				+0.3
3,177,233	+				+0.1
3,177,262	-				-0.0
3,177,275	-				-0.4
3,177,282	+				-2.6
3,177,282	+				+0.2
3,177,282	+				+0.6
3,177,290	-				-1.4
3,177,290	-				+2.4
3,177,290	-				-0.0
3,177,290	-				-1.0
3,177,290	-				+1.3
3,177,290	-				-0.9
3,177,349	-				-0.0
3,177,376	+		MIT1002_02863	0.13	-0.5
3,177,395	-		MIT1002_02863	0.17	-0.4
3,177,457	-		MIT1002_02863	0.30	-0.0
3,177,459	+		MIT1002_02863	0.31	-1.4
3,177,459	+		MIT1002_02863	0.31	+0.2
3,177,459	+		MIT1002_02863	0.31	-1.0
3,177,459	+		MIT1002_02863	0.31	-1.8
3,177,467	-		MIT1002_02863	0.32	+0.2
3,177,467	-		MIT1002_02863	0.32	-0.3
3,177,467	-		MIT1002_02863	0.32	+0.5
3,177,467	-		MIT1002_02863	0.32	+0.9
3,177,467	-		MIT1002_02863	0.32	-0.1
3,177,467	-		MIT1002_02863	0.32	+0.1
3,177,467	-		MIT1002_02863	0.32	+0.2
3,177,467	-		MIT1002_02863	0.32	-0.2
3,177,467	-		MIT1002_02863	0.32	+0.6
3,177,467	-		MIT1002_02863	0.32	-0.2
3,177,496	+		MIT1002_02863	0.39	+0.0
3,177,526	+		MIT1002_02863	0.45	+0.5
3,177,532	+		MIT1002_02863	0.46	+0.7
3,177,534	-		MIT1002_02863	0.47	-0.1
3,177,538	+		MIT1002_02863	0.47	-0.0
3,177,538	+		MIT1002_02863	0.47	-0.2
3,177,541	-		MIT1002_02863	0.48	-0.4
3,177,541	-		MIT1002_02863	0.48	-0.8
3,177,543	+		MIT1002_02863	0.48	+0.6
3,177,543	+		MIT1002_02863	0.48	+0.7
3,177,543	+		MIT1002_02863	0.48	+0.0
3,177,543	+		MIT1002_02863	0.48	-0.0
3,177,543	+		MIT1002_02863	0.48	-0.0
3,177,543	+		MIT1002_02863	0.48	-0.7
3,177,543	+		MIT1002_02863	0.48	-0.1
3,177,543	+		MIT1002_02863	0.48	+0.7
3,177,543	+		MIT1002_02863	0.48	+1.0
3,177,548	+		MIT1002_02863	0.49	-1.4
3,177,548	+		MIT1002_02863	0.49	-3.0
3,177,551	+		MIT1002_02863	0.50	-0.7
3,177,551	-		MIT1002_02863	0.50	-0.6
3,177,551	-		MIT1002_02863	0.50	-0.6
3,177,551	-		MIT1002_02863	0.50	-0.3
3,177,551	-		MIT1002_02863	0.50	-0.5
3,177,551	-		MIT1002_02863	0.50	-1.6
3,177,556	+		MIT1002_02863	0.51	+0.5
3,177,556	-		MIT1002_02863	0.51	+3.4
3,177,556	-		MIT1002_02863	0.51	-0.6
3,177,556	-		MIT1002_02863	0.51	-0.5
3,177,557	-		MIT1002_02863	0.51	+1.3
3,177,561	+		MIT1002_02863	0.52	-0.3
3,177,566	+		MIT1002_02863	0.53	-0.5
3,177,566	-		MIT1002_02863	0.53	+1.1
3,177,574	-		MIT1002_02863	0.55	-0.1
3,177,574	-		MIT1002_02863	0.55	+0.1
3,177,594	-		MIT1002_02863	0.59	+1.2
3,177,679	+		MIT1002_02863	0.77	-0.7
3,177,679	+		MIT1002_02863	0.77	+0.4
3,177,679	+		MIT1002_02863	0.77	+0.7
3,177,679	+		MIT1002_02863	0.77	+1.0
3,177,679	+		MIT1002_02863	0.77	+1.1
3,177,679	+		MIT1002_02863	0.77	-0.8
3,177,679	+		MIT1002_02863	0.77	+1.8
3,177,681	+		MIT1002_02863	0.77	-0.6
3,177,684	+		MIT1002_02863	0.78	-0.1
3,177,686	-		MIT1002_02863	0.78	+0.1
3,177,687	-		MIT1002_02863	0.79	+0.7
3,177,687	-		MIT1002_02863	0.79	-0.2
3,177,687	-		MIT1002_02863	0.79	+0.1
3,177,687	-		MIT1002_02863	0.79	+0.3
3,177,687	-		MIT1002_02863	0.79	-0.9
3,177,687	-		MIT1002_02863	0.79	-0.8
3,177,687	-		MIT1002_02863	0.79	-0.4
3,177,687	-		MIT1002_02863	0.79	-0.6
3,177,689	+		MIT1002_02863	0.79	+1.0
3,177,689	+		MIT1002_02863	0.79	+0.3
3,177,697	-		MIT1002_02863	0.81	-0.5
3,177,717	-		MIT1002_02863	0.85	-0.3
3,177,717	-		MIT1002_02863	0.85	-0.6
3,177,781	+				+0.3
3,177,797	-				+0.4
3,177,815	+				-1.9
3,177,823	-				+0.7
3,177,823	-				+0.2
3,177,825	-				-1.4
3,177,828	+				-0.1
3,177,833	-				+0.8
3,177,834	+				-0.2
3,177,834	+				+0.3
3,177,835	-				-0.6
3,177,835	-				+2.4
3,177,935	+		MIT1002_02864	0.13	+0.0
3,177,963	+		MIT1002_02864	0.16	+0.8
3,177,971	-		MIT1002_02864	0.17	+0.9
3,177,979	+		MIT1002_02864	0.18	+0.8
3,177,982	-		MIT1002_02864	0.19	-2.2
3,177,984	+		MIT1002_02864	0.19	+1.0
3,177,987	-		MIT1002_02864	0.19	-0.6
3,178,021	+		MIT1002_02864	0.23	-1.1
3,178,021	+		MIT1002_02864	0.23	+0.7
3,178,021	+		MIT1002_02864	0.23	-0.9
3,178,021	+		MIT1002_02864	0.23	-0.1
3,178,021	+		MIT1002_02864	0.23	-0.8
3,178,021	+		MIT1002_02864	0.23	+0.2
3,178,029	-		MIT1002_02864	0.24	-0.7
3,178,029	-		MIT1002_02864	0.24	-1.8
3,178,029	-		MIT1002_02864	0.24	-0.7
3,178,029	-		MIT1002_02864	0.24	-0.8
3,178,029	-		MIT1002_02864	0.24	-2.7
3,178,029	-		MIT1002_02864	0.24	-2.3
3,178,047	+		MIT1002_02864	0.27	+0.5
3,178,067	+		MIT1002_02864	0.29	-0.3
3,178,149	-		MIT1002_02864	0.40	-0.4
3,178,170	-		MIT1002_02864	0.42	-1.3
3,178,181	-		MIT1002_02864	0.44	-0.9