Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02859

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,172,305	-		MIT1002_02857	0.86	+0.5
3,172,340	-				-0.0
3,172,450	-				+1.6
3,172,536	+		MIT1002_02858	0.16	-0.4
3,172,536	+		MIT1002_02858	0.16	+0.3
3,172,536	+		MIT1002_02858	0.16	+0.8
3,172,536	+		MIT1002_02858	0.16	-0.5
3,172,538	-		MIT1002_02858	0.17	-0.6
3,172,544	-		MIT1002_02858	0.17	-1.1
3,172,544	-		MIT1002_02858	0.17	+0.0
3,172,546	+		MIT1002_02858	0.18	+2.6
3,172,554	-		MIT1002_02858	0.19	+1.5
3,172,567	+		MIT1002_02858	0.21	+0.5
3,172,637	-		MIT1002_02858	0.30	+1.0
3,172,642	-		MIT1002_02858	0.31	-0.2
3,172,642	-		MIT1002_02858	0.31	+0.5
3,172,649	+		MIT1002_02858	0.32	-0.6
3,172,729	+		MIT1002_02858	0.42	+1.9
3,172,808	+		MIT1002_02858	0.53	+0.2
3,172,826	-		MIT1002_02858	0.55	-2.4
3,172,840	+		MIT1002_02858	0.57	-0.4
3,172,891	+		MIT1002_02858	0.64	+0.3
3,172,946	+		MIT1002_02858	0.72	+0.5
3,172,988	-		MIT1002_02858	0.77	-1.0
3,173,100	+				-0.5
3,173,229	-				-0.2
3,173,359	+				-1.6
3,173,367	-				-2.7
3,173,380	-				+0.4
3,173,534	+		MIT1002_02859	0.16	-0.2
3,173,589	+		MIT1002_02859	0.20	-0.6
3,173,607	-		MIT1002_02859	0.21	-0.6
3,173,607	-		MIT1002_02859	0.21	+0.4
3,173,639	+		MIT1002_02859	0.23	-0.1
3,173,752	+		MIT1002_02859	0.31	-2.3
3,173,752	+		MIT1002_02859	0.31	-0.3
3,173,805	-		MIT1002_02859	0.34	-0.9
3,173,810	-		MIT1002_02859	0.35	-0.4
3,173,818	-		MIT1002_02859	0.35	+0.6
3,173,823	-		MIT1002_02859	0.36	-0.7
3,173,864	+		MIT1002_02859	0.38	-2.5
3,173,925	-		MIT1002_02859	0.42	+0.4
3,173,932	-		MIT1002_02859	0.43	-0.7
3,174,091	-		MIT1002_02859	0.53	-0.8
3,174,093	+		MIT1002_02859	0.54	-0.6
3,174,094	-		MIT1002_02859	0.54	-1.0
3,174,152	+		MIT1002_02859	0.58	+0.1
3,174,345	+		MIT1002_02859	0.70	-0.6
3,174,397	-		MIT1002_02859	0.74	+0.1
3,174,404	+		MIT1002_02859	0.74	+0.6
3,174,540	-		MIT1002_02859	0.84	+0.8
3,174,555	+		MIT1002_02859	0.85	-0.8
3,174,555	+		MIT1002_02859	0.85	-0.5
3,174,555	+		MIT1002_02859	0.85	+0.5
3,174,555	+		MIT1002_02859	0.85	+1.6
3,174,555	+		MIT1002_02859	0.85	+0.1
3,174,555	+		MIT1002_02859	0.85	-0.4
3,174,555	+		MIT1002_02859	0.85	+0.5
3,174,563	-		MIT1002_02859	0.85	-0.3
3,174,594	+		MIT1002_02859	0.87	+1.0
3,174,602	-		MIT1002_02859	0.88	+1.1
3,174,602	-		MIT1002_02859	0.88	+1.3
3,174,602	-		MIT1002_02859	0.88	-0.3
3,174,604	+		MIT1002_02859	0.88	+0.3
3,174,604	+		MIT1002_02859	0.88	-0.5
3,174,612	-		MIT1002_02859	0.88	-0.6
3,174,612	-		MIT1002_02859	0.88	-0.4
3,174,649	+				+1.2
3,174,714	-				+0.1
3,174,736	-				+0.1
3,174,809	+				+0.5
3,174,817	+				-0.4
3,174,817	+				-1.0
3,174,817	-				+1.3
3,174,826	-				-0.9
3,174,854	+				-0.5
3,174,881	+		MIT1002_02860	0.10	-1.1
3,174,881	+		MIT1002_02860	0.10	-0.7
3,174,947	+		MIT1002_02860	0.17	+1.1
3,174,955	-		MIT1002_02860	0.18	+0.3
3,174,970	-		MIT1002_02860	0.20	-1.5
3,174,976	-		MIT1002_02860	0.21	+0.1
3,175,052	+		MIT1002_02860	0.29	+0.2
3,175,069	+		MIT1002_02860	0.31	-0.5
3,175,079	-		MIT1002_02860	0.32	+0.4
3,175,115	+		MIT1002_02860	0.36	-0.3
3,175,128	-		MIT1002_02860	0.38	+0.8
3,175,146	+		MIT1002_02860	0.40	+0.0
3,175,156	-		MIT1002_02860	0.41	+0.4
3,175,186	-		MIT1002_02860	0.44	-1.3
3,175,189	-		MIT1002_02860	0.45	+1.0
3,175,190	+		MIT1002_02860	0.45	-0.8
3,175,190	+		MIT1002_02860	0.45	+1.2
3,175,190	+		MIT1002_02860	0.45	-0.0
3,175,190	+		MIT1002_02860	0.45	-1.9
3,175,190	+		MIT1002_02860	0.45	-0.6
3,175,190	+		MIT1002_02860	0.45	+0.0
3,175,191	+		MIT1002_02860	0.45	+0.2
3,175,198	-		MIT1002_02860	0.46	-0.7
3,175,198	-		MIT1002_02860	0.46	-0.6
3,175,198	-		MIT1002_02860	0.46	-0.9
3,175,198	-		MIT1002_02860	0.46	+0.1
3,175,198	-		MIT1002_02860	0.46	-0.4
3,175,198	-		MIT1002_02860	0.46	-0.4
3,175,199	-		MIT1002_02860	0.46	+0.9
3,175,263	-		MIT1002_02860	0.53	+1.0
3,175,287	-		MIT1002_02860	0.56	-0.3
3,175,297	-		MIT1002_02860	0.57	-0.5
3,175,297	-		MIT1002_02860	0.57	-0.1
3,175,313	+		MIT1002_02860	0.58	-1.8
3,175,319	-		MIT1002_02860	0.59	+0.7
3,175,321	-		MIT1002_02860	0.59	-2.0
3,175,321	-		MIT1002_02860	0.59	+0.1
3,175,340	-		MIT1002_02860	0.62	-1.6
3,175,409	+		MIT1002_02860	0.69	-0.4
3,175,417	-		MIT1002_02860	0.70	-1.0
3,175,439	-		MIT1002_02860	0.73	+1.2
3,175,472	-		MIT1002_02860	0.76	+0.7
3,175,489	-		MIT1002_02860	0.78	-0.3
3,175,533	+		MIT1002_02860	0.83	-1.0
3,175,533	+		MIT1002_02860	0.83	-0.8
3,175,533	+		MIT1002_02860	0.83	-0.4
3,175,559	-		MIT1002_02860	0.86	+1.1
3,175,561	-		MIT1002_02860	0.86	+1.0
3,175,583	-		MIT1002_02860	0.89	+0.4
3,175,587	+		MIT1002_02860	0.89	+1.2
3,175,595	-				+1.7
3,175,723	-				-0.1
3,175,723	-				+0.7