Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02753

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
3,055,842	-		MIT1002_02752	0.48	-1.3
3,055,896	+		MIT1002_02752	0.51	-1.1
3,055,904	-		MIT1002_02752	0.52	+0.8
3,055,909	-		MIT1002_02752	0.52	+0.2
3,055,916	+		MIT1002_02752	0.53	-0.0
3,055,916	+		MIT1002_02752	0.53	-1.0
3,055,924	-		MIT1002_02752	0.53	-0.2
3,055,924	-		MIT1002_02752	0.53	-1.6
3,056,056	-		MIT1002_02752	0.60	-0.0
3,056,057	-		MIT1002_02752	0.60	-1.5
3,056,085	-		MIT1002_02752	0.62	+1.1
3,056,091	+		MIT1002_02752	0.62	-0.2
3,056,097	+		MIT1002_02752	0.63	-0.0
3,056,169	-		MIT1002_02752	0.67	-2.0
3,056,169	-		MIT1002_02752	0.67	+2.4
3,056,191	+		MIT1002_02752	0.68	-0.2
3,056,238	-		MIT1002_02752	0.71	+0.6
3,056,250	+		MIT1002_02752	0.71	-0.1
3,056,286	+		MIT1002_02752	0.73	-1.5
3,056,383	+		MIT1002_02752	0.79	+0.6
3,056,389	+		MIT1002_02752	0.79	+0.2
3,056,389	+		MIT1002_02752	0.79	+0.0
3,056,543	-		MIT1002_02752	0.88	+0.4
3,056,545	+		MIT1002_02752	0.88	+0.8
3,056,560	+		MIT1002_02752	0.89	-1.7
3,056,570	+		MIT1002_02752	0.89	+0.2
3,056,588	-				-0.4
3,056,590	+				-0.3
3,056,598	-				-1.5
3,056,601	+				-1.2
3,056,609	-				-1.1
3,056,679	+				-1.4
3,056,736	-				-0.6
3,056,914	-				-0.3
3,056,952	+				+0.3
3,056,973	-		MIT1002_02753	0.11	-0.2
3,057,023	-		MIT1002_02753	0.15	+0.0
3,057,033	-		MIT1002_02753	0.16	-0.8
3,057,035	+		MIT1002_02753	0.16	-0.5
3,057,037	+		MIT1002_02753	0.17	+0.0
3,057,091	+		MIT1002_02753	0.21	+0.3
3,057,093	-		MIT1002_02753	0.21	+2.6
3,057,110	-		MIT1002_02753	0.23	+2.3
3,057,161	+		MIT1002_02753	0.27	+0.4
3,057,161	+		MIT1002_02753	0.27	-0.3
3,057,190	-		MIT1002_02753	0.30	+1.3
3,057,249	-		MIT1002_02753	0.35	+0.2
3,057,249	-		MIT1002_02753	0.35	-0.4
3,057,249	-		MIT1002_02753	0.35	+0.2
3,057,249	-		MIT1002_02753	0.35	-0.4
3,057,406	+		MIT1002_02753	0.48	-1.1
3,057,444	-		MIT1002_02753	0.51	-0.9
3,057,471	-		MIT1002_02753	0.54	+0.8
3,057,546	+		MIT1002_02753	0.60	-0.6
3,057,546	+		MIT1002_02753	0.60	-0.5
3,057,567	+		MIT1002_02753	0.62	+0.8
3,057,653	-		MIT1002_02753	0.69	-1.4
3,057,698	+		MIT1002_02753	0.73	-0.5
3,057,828	-		MIT1002_02753	0.84	-0.3
3,057,986	+				-0.1
3,058,005	-				-0.4
3,058,028	-				-0.1
3,058,065	+				+0.9
3,058,092	+				-0.8
3,058,344	+		MIT1002_02754	0.53	-1.3
3,058,409	+				-1.8
3,058,541	-				+0.1
3,058,623	+				-1.6
3,058,627	+				-1.0
3,058,631	-				-0.8
3,058,631	-				+0.3
3,058,684	-				-0.4
3,058,686	+				+1.0
3,058,694	-				+0.6
3,058,739	+				-0.2
3,058,773	-		MIT1002_02755	0.12	-0.8