Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02530

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
2,819,276	-				-0.2
2,819,276	-				-1.2
2,819,296	-		MIT1002_02529	0.11	-1.8
2,819,327	-		MIT1002_02529	0.15	-0.5
2,819,387	-		MIT1002_02529	0.22	-3.2
2,819,539	+		MIT1002_02529	0.42	+8.0
2,819,554	-		MIT1002_02529	0.43	-0.8
2,819,572	-		MIT1002_02529	0.46	-0.8
2,819,614	+		MIT1002_02529	0.51	-0.5
2,819,732	+		MIT1002_02529	0.66	+0.9
2,819,737	+		MIT1002_02529	0.67	-1.2
2,819,745	+		MIT1002_02529	0.68	-1.1
2,819,745	-		MIT1002_02529	0.68	-2.4
2,819,745	-		MIT1002_02529	0.68	-1.3
2,819,781	-		MIT1002_02529	0.72	-2.7
2,819,797	+		MIT1002_02529	0.74	+1.7
2,819,837	-		MIT1002_02529	0.79	-2.2
2,819,841	-		MIT1002_02529	0.80	-0.9
2,819,882	+		MIT1002_02529	0.85	-0.2
2,819,959	-				-2.4
2,819,962	-				-2.8
2,819,962	-				-1.8
2,819,967	-				+0.1
2,819,981	+				-0.9
2,819,981	+				-1.4
2,820,006	+				-0.8
2,820,014	-				-0.6
2,820,014	-				-0.3
2,820,035	+				-0.2
2,820,043	-				-1.4
2,820,177	+				+0.6
2,820,252	+				+0.7
2,820,294	-				+0.7
2,820,295	+				-2.6
2,820,345	-				+0.0
2,820,352	-				-0.3
2,820,397	-				-0.1
2,820,404	-				+0.5
2,820,416	-				+0.0
2,820,453	-				-0.5
2,820,617	+				-2.2
2,820,617	-				-2.2
2,820,665	+				-0.3
2,820,730	+		MIT1002_02530	0.11	-1.9
2,820,795	-		MIT1002_02530	0.12	-1.0
2,820,950	+		MIT1002_02530	0.15	+0.6
2,821,119	-		MIT1002_02530	0.19	+0.3
2,821,157	+		MIT1002_02530	0.19	-0.6
2,821,157	-		MIT1002_02530	0.19	-1.1
2,821,186	-		MIT1002_02530	0.20	-1.0
2,821,261	+		MIT1002_02530	0.21	+1.0
2,821,261	+		MIT1002_02530	0.21	+0.3
2,821,269	-		MIT1002_02530	0.22	-0.4
2,821,315	-		MIT1002_02530	0.23	-1.1
2,821,315	-		MIT1002_02530	0.23	-0.3
2,821,317	+		MIT1002_02530	0.23	-0.5
2,821,317	+		MIT1002_02530	0.23	-0.8
2,821,317	+		MIT1002_02530	0.23	+1.4
2,821,349	+		MIT1002_02530	0.23	-1.0
2,821,415	+		MIT1002_02530	0.25	+0.9
2,821,415	-		MIT1002_02530	0.25	+0.3
2,821,538	-		MIT1002_02530	0.27	-1.6
2,821,538	-		MIT1002_02530	0.27	-0.5
2,821,554	+		MIT1002_02530	0.27	-2.4
2,821,575	-		MIT1002_02530	0.28	-0.2
2,821,596	+		MIT1002_02530	0.28	+0.4
2,821,614	+		MIT1002_02530	0.29	-0.1
2,821,614	+		MIT1002_02530	0.29	-0.1
2,821,700	+		MIT1002_02530	0.30	-0.2
2,821,730	-		MIT1002_02530	0.31	-0.2
2,822,446	-		MIT1002_02530	0.46	-1.0
2,822,446	-		MIT1002_02530	0.46	-1.7
2,822,446	-		MIT1002_02530	0.46	+0.1
2,822,446	-		MIT1002_02530	0.46	+0.5
2,822,472	+		MIT1002_02530	0.46	-1.0
2,822,558	-		MIT1002_02530	0.48	-0.3
2,822,582	-		MIT1002_02530	0.48	+0.6
2,822,594	-		MIT1002_02530	0.49	-0.7
2,822,642	-		MIT1002_02530	0.49	-0.5
2,822,885	+		MIT1002_02530	0.54	-1.5
2,822,886	+		MIT1002_02530	0.54	-0.9
2,822,941	-		MIT1002_02530	0.56	+0.1
2,822,966	-		MIT1002_02530	0.56	+0.5
2,823,165	+		MIT1002_02530	0.60	-1.4
2,823,239	+		MIT1002_02530	0.62	-2.8
2,823,455	+		MIT1002_02530	0.66	-0.6
2,823,475	-		MIT1002_02530	0.66	-2.1
2,823,531	+		MIT1002_02530	0.68	+0.4
2,823,660	+		MIT1002_02530	0.70	-0.8
2,823,668	-		MIT1002_02530	0.70	-0.9
2,823,688	+		MIT1002_02530	0.71	+1.6
2,823,706	+		MIT1002_02530	0.71	-1.2
2,823,867	+		MIT1002_02530	0.74	+0.5
2,823,877	+		MIT1002_02530	0.75	-1.5
2,823,877	+		MIT1002_02530	0.75	-2.5
2,823,939	-		MIT1002_02530	0.76	-0.9
2,824,013	-		MIT1002_02530	0.77	-0.3
2,824,049	+		MIT1002_02530	0.78	-0.4
2,824,057	-		MIT1002_02530	0.78	-0.1
2,824,121	+		MIT1002_02530	0.80	-2.6
2,824,127	+		MIT1002_02530	0.80	-1.9
2,824,174	-		MIT1002_02530	0.81	-0.4
2,824,176	+		MIT1002_02530	0.81	-1.1
2,824,289	+		MIT1002_02530	0.83	-0.3
2,824,340	-		MIT1002_02530	0.84	-1.8
2,824,350	+		MIT1002_02530	0.84	-0.9
2,824,410	+		MIT1002_02530	0.85	-0.8
2,824,418	-		MIT1002_02530	0.86	+0.5
2,824,475	+		MIT1002_02530	0.87	-0.8
2,824,476	+		MIT1002_02530	0.87	-3.1
2,824,493	-		MIT1002_02530	0.87	-0.8
2,824,493	-		MIT1002_02530	0.87	-0.2
2,824,669	+				+0.2
2,824,763	+				+0.1
2,824,763	+				+0.2
2,824,778	+				-0.6
2,824,781	-				-0.5
2,824,786	-				-0.9
2,824,879	+				-0.3
2,824,899	-				-0.8
2,825,023	+				-1.5
2,825,141	-				-2.2
2,825,152	+				-0.8
2,825,274	+				-0.5
2,825,285	-				+0.7
2,825,338	-				-0.1
2,825,373	-				-0.2
2,825,378	-				+2.7
2,825,387	+				+0.8
2,825,387	+				+0.8
2,825,395	-				+0.3
2,825,395	-				-0.3
2,825,431	-				+1.3
2,825,550	+				+1.0
2,825,550	+				-0.8
2,825,550	+				+0.6
2,825,551	+				+0.6
2,825,689	+				+1.1
2,825,724	-				-0.5
2,825,741	+				-0.1
2,825,741	+				-0.1
2,825,812	-		MIT1002_02531	0.16	-1.2
2,825,846	+		MIT1002_02531	0.20	-0.6
2,825,872	-		MIT1002_02531	0.22	-1.0
2,825,957	+		MIT1002_02531	0.30	-1.7