Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02508

Experiment: monoculture; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 4
2,796,561	+		MIT1002_02507	0.42	+0.3
2,796,561	+		MIT1002_02507	0.42	+0.8
2,796,571	+		MIT1002_02507	0.43	-0.7
2,796,571	+		MIT1002_02507	0.43	+0.1
2,796,579	-		MIT1002_02507	0.43	+0.3
2,796,579	-		MIT1002_02507	0.43	+1.2
2,796,701	-		MIT1002_02507	0.52	+0.1
2,796,705	+		MIT1002_02507	0.52	-0.2
2,796,713	-		MIT1002_02507	0.52	+0.3
2,796,713	-		MIT1002_02507	0.52	+0.4
2,796,713	-		MIT1002_02507	0.52	+0.4
2,796,713	-		MIT1002_02507	0.52	-0.4
2,796,812	+		MIT1002_02507	0.59	+0.1
2,796,883	-		MIT1002_02507	0.64	-0.3
2,796,883	-		MIT1002_02507	0.64	+0.5
2,796,915	+		MIT1002_02507	0.66	+0.2
2,796,991	-		MIT1002_02507	0.71	-0.3
2,797,013	-		MIT1002_02507	0.72	+0.0
2,797,013	-		MIT1002_02507	0.72	+0.2
2,797,018	-		MIT1002_02507	0.73	-0.0
2,797,052	+		MIT1002_02507	0.75	+0.7
2,797,076	+		MIT1002_02507	0.77	+0.4
2,797,079	+		MIT1002_02507	0.77	-0.5
2,797,089	+		MIT1002_02507	0.78	+0.5
2,797,096	-		MIT1002_02507	0.78	-0.1
2,797,138	-		MIT1002_02507	0.81	-1.5
2,797,205	+		MIT1002_02507	0.85	-0.3
2,797,212	+		MIT1002_02507	0.86	-0.9
2,797,213	-		MIT1002_02507	0.86	-0.6
2,797,213	-		MIT1002_02507	0.86	-0.5
2,797,260	+		MIT1002_02507	0.89	+1.4
2,797,332	-				-0.5
2,797,364	-				-0.4
2,797,370	-				-0.5
2,797,375	-				+0.5
2,797,393	+				-0.7
2,797,424	+				-0.0
2,797,469	-				-0.2
2,797,521	+				+0.3
2,797,541	+				-0.1
2,797,543	-				-0.4
2,797,571	-		MIT1002_02508	0.12	+0.0
2,797,571	-		MIT1002_02508	0.12	-1.1
2,797,575	+		MIT1002_02508	0.13	+0.9
2,797,583	-		MIT1002_02508	0.15	-0.5
2,797,583	-		MIT1002_02508	0.15	+0.8
2,797,605	-		MIT1002_02508	0.20	-0.1
2,797,626	-		MIT1002_02508	0.25	+0.3
2,797,646	-		MIT1002_02508	0.30	+0.2
2,797,648	+		MIT1002_02508	0.30	-0.6
2,797,714	-		MIT1002_02508	0.46	-0.7
2,797,715	+		MIT1002_02508	0.46	-2.2
2,797,814	-		MIT1002_02508	0.70	+0.2
2,797,822	+		MIT1002_02508	0.72	-0.9
2,797,843	+		MIT1002_02508	0.77	-0.5
2,797,860	+		MIT1002_02508	0.81	-0.1
2,797,913	+				+0.0
2,797,916	-				-0.3
2,797,949	+				+0.3
2,798,102	+				+0.6
2,798,136	+				+0.9
2,798,147	+				-0.1
2,798,154	+				-0.5
2,798,155	-				-0.9
2,798,155	-				+0.3
2,798,219	+				+0.2
2,798,250	+		MIT1002_02509	0.11	+0.7
2,798,251	-		MIT1002_02509	0.11	-0.0
2,798,294	+		MIT1002_02509	0.16	+0.2
2,798,294	+		MIT1002_02509	0.16	+0.7
2,798,353	+		MIT1002_02509	0.22	-0.0
2,798,361	-		MIT1002_02509	0.22	-0.6
2,798,361	-		MIT1002_02509	0.22	+0.5
2,798,361	-		MIT1002_02509	0.22	-0.2
2,798,363	-		MIT1002_02509	0.23	-0.9
2,798,418	-		MIT1002_02509	0.28	+0.8
2,798,439	+		MIT1002_02509	0.30	+1.5
2,798,439	-		MIT1002_02509	0.30	-0.1
2,798,509	+		MIT1002_02509	0.37	-0.6
2,798,527	-		MIT1002_02509	0.39	+0.5
2,798,552	-		MIT1002_02509	0.42	-1.9
2,798,553	+		MIT1002_02509	0.42	-1.4
2,798,622	+		MIT1002_02509	0.49	-0.8
2,798,678	-		MIT1002_02509	0.54	-0.6
2,798,704	-		MIT1002_02509	0.57	+0.3
2,798,741	-		MIT1002_02509	0.61	+0.6
2,798,842	+		MIT1002_02509	0.71	-1.0
2,798,860	-		MIT1002_02509	0.73	-0.1
2,798,917	+		MIT1002_02509	0.79	+2.1